BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0090.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase [Herba...   350   8e-98
gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase [Herba...    62   5e-11

>gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  350 bits (897), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 174/236 (73%), Positives = 199/236 (84%)

Query: 1   LLSELTLTTALRTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVF 60
           LLSELTLTTALRTAATSVLAAR MAR DSRVMA+IGNGAQSEFQ +AFH  +GI+ +R++
Sbjct: 101 LLSELTLTTALRTAATSVLAARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIEVVRLY 160

Query: 61  DVDAAATDKLCRNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGM 120
           D D AAT +L RNL A   L+++   S  EAVRGADIVTT+TADKRRA I++  M+EAGM
Sbjct: 161 DTDPAATARLMRNLRACSGLQLIPCASAAEAVRGADIVTTLTADKRRACIISPAMLEAGM 220

Query: 121 HLNAVGGDCPGKTELQREVLSRARVVVEFEPQSRVEGELQQMPAEFAVTELWQVLAGAAS 180
           HLNAVGGDCPGKTEL  +VL  ARVVVEF PQSR+EGE+QQMPA+F VTELWQVLAG A 
Sbjct: 221 HLNAVGGDCPGKTELHADVLKAARVVVEFAPQSRIEGEVQQMPADFPVTELWQVLAGHAP 280

Query: 181 GRVGDDEVTVFDSVGFALEDFSALRYLDEQLDARFTQQIDLVPDLADPKDLYGAAV 236
           GR    EVTVFDSVGFALEDF+ALRYLDEQ+DARFT+Q+DL+P + DPKDLYG AV
Sbjct: 281 GRSSAAEVTVFDSVGFALEDFAALRYLDEQVDARFTRQLDLIPAMDDPKDLYGLAV 336


>gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score = 61.6 bits (148), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 15/202 (7%)

Query: 9   TALRTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVFDVDA--AA 66
           T LRTAA + +A   +ARPD+ V+A+IG G Q+     A  ++    E+ +       A 
Sbjct: 97  TGLRTAAATAVACDALARPDAGVLAVIGTGVQARSHIPALLQVRPFKEVLIAGRSGQQAL 156

Query: 67  TDKLCRNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGMHLNAVG 126
            +++ R LG     R+V   S+DEA   AD++ TVT  +    +   +++  G  + AVG
Sbjct: 157 AEEVTRTLGV--PARMV---SIDEAAAQADVLVTVT--RSATPLFDGELLRPGAFVAAVG 209

Query: 127 GDCPGKTELQREVLSRARVV-VEFEPQSRVE-GELQQM-PAEF---AVTELWQVLAGAAS 180
                  EL    + RA  + VE++PQ++ E G+L Q  P  F    V EL Q + G+  
Sbjct: 210 ASKANVRELDDTAIGRAAALFVEWKPQAQQEAGDLVQCAPGVFDWAQVMELAQAVDGSMP 269

Query: 181 GRVGDDEVTVFDSVGFALEDFS 202
            +   D++ ++  +G  LED +
Sbjct: 270 YQRRPDDIVIYKGIGIGLEDVA 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 706,222
Number of extensions: 28675
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)