BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0088.p (155 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311006|ref|YP_003775098.1| transcription regulator protein... 130 7e-32 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 126 8e-31 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 117 3e-28 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 110 7e-26 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 103 7e-24 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 130 bits (326), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 98/150 (65%) Query: 1 MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60 +D+ D+ +L LQ+DG ++N + + +HLS Q RRV+ LEE VI RY A++ PA VG Sbjct: 6 VDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65 Query: 61 LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120 L VTAF ++LDR + E + PE+ EC++++G+ DY+L++V+ DL + S F+ Sbjct: 66 LGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125 Query: 121 TDRLMQVPGVAGLRSMICLEEVKPLSGLPI 150 RL+++PGV ++S I L++VK LP+ Sbjct: 126 MTRLLRLPGVTNVKSNITLKKVKQSHELPL 155 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 126 bits (316), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 97/149 (65%) Query: 1 MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60 +D D++IL +LQ++ +SN++++ I+LSP L RV+ LE +G+I RY AL P +G Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 61 LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120 L V FV + L+R + + + E+ + F E++E Y ++GD DYLL++V DL +L HF+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 121 TDRLMQVPGVAGLRSMICLEEVKPLSGLP 149 D L ++PG+ +RS L+++K + LP Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 117 bits (294), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 89/151 (58%) Query: 1 MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60 +DK+ KIL LQ DGR+SNVD++ ++LSP CL RVR L+E G I YAA + P + Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 61 LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120 + + F+ + LDR E + ++ PEI+EC+ ++G FDYL+K D+ + FL Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 121 TDRLMQVPGVAGLRSMICLEEVKPLSGLPIR 151 L+Q+ GV + +EEVK LPIR Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPIR 154 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 110 bits (274), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 86/150 (57%) Query: 1 MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60 +DKLD +IL +LQ+DGR+S ++ E + LS C+ RVR +E GVI Y A V P ++G Sbjct: 11 LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70 Query: 61 LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120 + FV ++L+ + + PE+ EC+ +SGDFDYL+K + L Sbjct: 71 ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130 Query: 121 TDRLMQVPGVAGLRSMICLEEVKPLSGLPI 150 D L+Q+PG A +S + +EE+K LP+ Sbjct: 131 GDILLQLPGAAQSKSYVVMEEIKETLALPL 160 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 103 bits (257), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 85/143 (59%) Query: 1 MDKLDVKILELLQQDGRMSNVDISENIHLSPPQCLRRVRVLEEQGVIRRYAALVAPAAVG 60 +D++D +IL+ LQ+DGR+ N ++++ + +S C + L E+G ++ A++ P +G Sbjct: 3 LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKLG 62 Query: 61 LDVTAFVALSLDRAQFKQVREVESVIRDFPEIIECYTISGDFDYLLKVVSHDLKSLSHFL 120 L V V + LDR+ + E E +RD + EC ++G+FDY +K+ DL++ + Sbjct: 63 LPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122 Query: 121 TDRLMQVPGVAGLRSMICLEEVK 143 + L+++PGV LRS L EVK Sbjct: 123 ANTLLRLPGVRQLRSFFVLNEVK 145 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.141 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 455,291 Number of extensions: 16726 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 9 Length of query: 155 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,250,540 Effective search space: 96291580 Effective search space used: 96291580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 126 (53.1 bits)