BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0087.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226...   154   3e-39

>gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  154 bits (390), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 105/175 (60%), Gaps = 18/175 (10%)

Query: 1   LILQHPLEVAQAKGSGRLLHLSLTDSVLAQGEQFDEAVLRDLLFG----------GGIQP 50
           LILQHPLEV  AK S RLLHLSL  S L  G  FD   L  LL G            + P
Sbjct: 43  LILQHPLEVGNAKNSVRLLHLSLPASKLVVGSVFDTDELEALLHGPSRLRNVSPSEKVHP 102

Query: 51  VLLYPRTPGEPAGALPDLSTP--------ERLRLVILDATWRKSRKMLYLNPLLQVLPRL 102
           VLLY       A    D  T         +R+RLVILD TWRKSRKML+ NP+LQ LPRL
Sbjct: 103 VLLYTDDASTSATTYFDARTMRVEGQEQFQRVRLVILDGTWRKSRKMLFENPILQTLPRL 162

Query: 103 PLVDPPASQYRIRKAHRADQLSTLEAACHALGQLEDAAARYLPLLQAFDGFVTQQ 157
            L D PAS+Y IRK+H+ +QLSTLEA  +AL QLE  + +Y PLL AFD FV QQ
Sbjct: 163 VLSDTPASRYTIRKSHKPEQLSTLEAVGYALMQLERNSEKYHPLLTAFDNFVLQQ 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,786
Number of extensions: 19392
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)