BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0083.p (344 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 419 e-118 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 306 2e-84 gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A... 252 4e-68 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 219 3e-58 gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A... 103 2e-23 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 419 bits (1076), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/290 (67%), Positives = 243/290 (83%) Query: 54 SAATRELRIGYQKGLLSLLKGRGTLEKRLAPLGVSIKWIEFSAGPVQLEALSVGSIDFGD 113 +AA R+LR+GYQKG LSL++ G LE+RLAPLG ++KW+EFSAGPVQLEAL GSIDFGD Sbjct: 47 AAAPRQLRVGYQKGALSLIRAHGVLEQRLAPLGATVKWVEFSAGPVQLEALGAGSIDFGD 106 Query: 114 VGEAPPIFSQAAGSPLVYVAATVSRPGLEGILLPAGSAIKSVADLKGKKIALNKGSNVHY 173 VGEAPPIF+QAAG+PLVYV ATV RP +E +L+ S ++ LKGK+IALNKGSNVHY Sbjct: 107 VGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLVKDDSELQRPQQLKGKRIALNKGSNVHY 166 Query: 174 FLVKLLEKSGLRYADVNPVWLSPADARAAFEKGAIDAWAIWEPYLAAAQSTLSAQILADA 233 FLVKLLEK GL+Y DV PVWL+PADARAAFE+GA+DAWAIWEPYLAAAQ L A+ILADA Sbjct: 167 FLVKLLEKHGLKYGDVTPVWLAPADARAAFERGAVDAWAIWEPYLAAAQQGLKARILADA 226 Query: 234 NGVVKNRAYYFSSKDYAQKNKDVINLIIDELNQIDVWAKANHAALSAELSTVLGLPKPVV 293 +GVVKNRAYYFS++DYA+ + D++ + ++EL +ID WA+A ++EL+ +LGLP+ V+ Sbjct: 227 DGVVKNRAYYFSTRDYARDHADLLRIALEELGKIDAWAQARPDEYASELAGILGLPRSVL 286 Query: 294 DIMVGRYSFGTEPITGAILAEQQRIADTFFDLKLIPRKIDVKEAAPPWLA 343 D++V RY +GT PIT AIL EQQ+IADTF DL+LIPRKI + EAAPPWLA Sbjct: 287 DVVVRRYHYGTLPITRAILDEQQQIADTFLDLRLIPRKISLLEAAPPWLA 336 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 306 bits (783), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/326 (47%), Positives = 224/326 (68%), Gaps = 4/326 (1%) Query: 14 LKSNTVSAVNSLRRNVLKGGAGFSALTAFTALTSLFPLSASAATRELRIGYQKG--LLSL 71 + +N V+ RR ++ + AL A T P+ A T+ LRIGYQK L L Sbjct: 1 MSANKNKTVHQARRRAIQRLSAI-ALGALTIALGASPVQAQE-TKLLRIGYQKAANTLVL 58 Query: 72 LKGRGTLEKRLAPLGVSIKWIEFSAGPVQLEALSVGSIDFGDVGEAPPIFSQAAGSPLVY 131 LK GTLEKRL PLGV +KW EF+AGP LEAL+VGS+DFG VGEAPP+F+QAAG+ VY Sbjct: 59 LKAHGTLEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVY 118 Query: 132 VAATVSRPGLEGILLPAGSAIKSVADLKGKKIALNKGSNVHYFLVKLLEKSGLRYADVNP 191 A + P EG+L+ S IKSVA+LKGKKIA NKGS+VH+ +V LL+K+GL+Y+D+ P Sbjct: 119 TAYEIPTPDAEGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQP 178 Query: 192 VWLSPADARAAFEKGAIDAWAIWEPYLAAAQSTLSAQILADANGVVKNRAYYFSSKDYAQ 251 V+L+PADARAAFE+GA+DAWAIW+P+ AAA+ + A+ LA G V + ++ S++ +A Sbjct: 179 VYLAPADARAAFERGAVDAWAIWDPFQAAAEKQVGARRLATGVGAVNHHQFFLSARPFAA 238 Query: 252 KNKDVINLIIDELNQIDVWAKANHAALSAELSTVLGLPKPVVDIMVGRYSFGTEPITGAI 311 KN V ++++E+++ W + + A +A+L+ + GL +++ + RY+ +P+ + Sbjct: 239 KNPQVEKILLEEISREGEWVRTHTAQAAAQLAPIQGLDADIIETGLKRYAHVYKPVDAQV 298 Query: 312 LAEQQRIADTFFDLKLIPRKIDVKEA 337 LAEQQ+IAD F++LKLIP+ + V +A Sbjct: 299 LAEQQKIADAFYELKLIPKPLKVSDA 324 >gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 252 bits (643), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 136/322 (42%), Positives = 195/322 (60%), Gaps = 10/322 (3%) Query: 21 AVNSLRRNVLKGGAGFSALTAFTALTSLFPLSASA-ATRELRIGYQKG--LLSLLKGRGT 77 + +S RR +L A TA ++L P S A + +RIGYQK LL++LK GT Sbjct: 5 STDSTRRRLLH------AATALGLGSALAPASVFAQGNKAIRIGYQKSSTLLTILKANGT 58 Query: 78 LEKRLAPLGVSIKWIEFSAGPVQLEALSVGSIDF-GDVGEAPPIFSQAAGSPLVYVAATV 136 LEK LAP G I W EF++G LEAL+VG +D DV + P+F+QAAG+ L YVA Sbjct: 59 LEKLLAPTGAKISWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLAYVAQES 118 Query: 137 SRPGLEGILLPAGSAIKSVADLKGKKIALNKGSNVHYFLVKLLEKSGLRYADVNPVWLSP 196 P + I++ A S ++ +DLKGKKIA+ K + VHY L+ LEK+GL+++DV+ +LSP Sbjct: 119 PSPAAQAIVVRADSVLRKASDLKGKKIAVTKAAGVHYLLIATLEKAGLKFSDVDAAYLSP 178 Query: 197 ADARAAFEKGAIDAWAIWEPYLAAAQSTLSAQILADANGVVKNRAYYFSSKDYAQKNKDV 256 AD RAAFE+G++DAW W+P+LA Q +IL+D GV + YY +S +AQ +V Sbjct: 179 ADGRAAFERGSVDAWVTWDPFLAGVQRQSQVRILSDGRGVADYQRYYLASASFAQARPEV 238 Query: 257 INLIIDELNQIDVWAKANHAALSAELSTVLGLPKPVVDIMVGRYSFGTEPITGAILAEQQ 316 + ++ DEL + W K + +A L+ + GL +++ R S+ + L EQQ Sbjct: 239 LRVVFDELQKTGHWVKQHPKEAAAFLAPLWGLDADTIELANSRRSYEVRAVRPEALGEQQ 298 Query: 317 RIADTFFDLKLIPRKIDVKEAA 338 RIADTFF L+PRKI+ + A Sbjct: 299 RIADTFFAAGLLPRKINTNDVA 320 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 219 bits (557), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/321 (38%), Positives = 186/321 (57%), Gaps = 9/321 (2%) Query: 26 RRNVLKGGAGFSALTAFTALTSLFPLSASAATRELRIGYQK-GLLSLLKGRGTLEKRLAP 84 RR +L+G A AL S PL +AA + LRIGYQK L++LKG G LE+ L P Sbjct: 10 RRLLLQG-------LAAGALASGTPLVRAAADKVLRIGYQKFNTLNILKGSGKLEQALQP 62 Query: 85 LGVSIKWIEFSAGPVQLEALSVGSIDFGDVGEAPPIFSQAAGSPLVYVAATVSRPGLEGI 144 G S+KW EF+AGP EAL+ +ID G + P +F+ A+G VY+ A P GI Sbjct: 63 QGWSVKWFEFAAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGAEQPYPKGIGI 122 Query: 145 LLPAGSAIKSVADLKGKKIALNKGSNVHYFLVKLLEKSGLRYADVNPVWLS-PADARAAF 203 + S I+SVADLKGKK+A +G NV + L+K LE+ GL Y D+ PV+++ AD RAAF Sbjct: 123 FVAQESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRAAF 182 Query: 204 EKGAIDAWAIWEPYLAAAQSTLSAQILADANGVVKNRAYYFSSKDYAQKNKDVINLIIDE 263 + G +DA +W+P+LA + +IL D G+ NR ++ + + ++KD++ + E Sbjct: 183 QSGNVDAATLWDPFLAGQELATRPRILRDGTGLSNNRTFHLAVPSFVDRHKDIVRTVFAE 242 Query: 264 LNQIDVWAKANHAALSAELSTVLGLPKPVVDIMVGRYSFGTEPITGAILAEQQRIADTFF 323 L + + W +++ + L+ LG+ V+ + R ++ T + I+AEQQ+IAD F Sbjct: 243 LKKTNQWTQSHPQETAELLAPQLGVDPKVLRLATERRNYTTVAVDAGIVAEQQQIADAFL 302 Query: 324 DLKLIPRKIDVKEAAPPWLAV 344 L LI + V++ P + V Sbjct: 303 KLGLIKNPVRVQDKVYPEVLV 323 >gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 15/300 (5%) Query: 26 RRNVLKGGAGFSALTAFTALTSLFPLSASAATR----ELRIGYQKGLLSLLKGRGTLEKR 81 RR+ L+ +TA + PL +SAA L Y +L+ G LE+ Sbjct: 3 RRDFLRLAPAALGVTALGGI----PLLSSAAQPPKVIRLDYAYYSPPSLVLRKFGWLEED 58 Query: 82 LAPLGVSIKWIEFSAGPVQLEALSVGSIDFGDVGEAPPIFSQAAGSPL--VYVAATVSRP 139 L G +KW+ LE L+ S+DFG + ++A G+P+ VY+ SRP Sbjct: 59 LKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARANGNPVKAVYI---YSRP 115 Query: 140 GLEGILLPAGSAIKSVADLKGKKIALNKGSNVHYFLVKLLEKSGLRYADVNPVWLSPADA 199 + + S +KS+ +LKGKKIA KG++ + FL++ L ++GL+ +DV V L AD Sbjct: 116 EWTALAVGKESPVKSINELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADG 175 Query: 200 RAAFEKGAIDAWAIWEPYLAAAQSTLSAQILADANGVVKNRAYYFSSKDYAQKNKDVINL 259 RAA E+G + AWA +P+LAA++ ++++ N + S +A ++ D + Sbjct: 176 RAALEQGRVAAWAGLDPHLAASELEAGSRLIY-RNVNFNTYGFLNVSDSFAARHPDQVKR 234 Query: 260 IIDELNQIDVWAKANHAALSAELSTVLGLPKPVVDIMVGRYSFGTEPITGAILAEQQRIA 319 +I + W A+ A LS L PV + + R F ++P G E R A Sbjct: 235 VIAAYERARSWIIAHPDETVALLSEESKLSAPVARLQLKRNDF-SQPQIGREHIEALRAA 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,029,008 Number of extensions: 42890 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 8 Length of query: 344 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 258 Effective length of database: 1,212,660 Effective search space: 312866280 Effective search space used: 312866280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)