BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0082.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311651|ref|YP_003775743.1| rhodanese-related sulfurtransfe...   229   1e-61
gi|300312429|ref|YP_003776521.1| rhodanese-related sulfurtransfe...    89   3e-19

>gi|300311651|ref|YP_003775743.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  229 bits (584), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/167 (73%), Positives = 136/167 (81%), Gaps = 1/167 (0%)

Query: 72  SFMSVAYSSAPVQSPVSTAALPEELASIQADARSSSLPYAGGVPPVLAWKLFSTRQVLLV 131
           S  SVA  SAP     S   LP ELA I+A A +  LPYAGG+ P  AW L  T +VLLV
Sbjct: 3   SLSSVATLSAPAPQ-ASQRELPPELAQIRAQAIADGLPYAGGITPKQAWALVQTGKVLLV 61

Query: 132 DVRSNEERKFVGHVPGSIHVPWATGTALTRNPRFVRELESKIGGKEVVALLLCRSGKRSA 191
           DVR+ EERKFVGHVP S+HV WATGT+L+RNPRFVRELESK+GGK+V ALLLCRSGKRSA
Sbjct: 62  DVRTAEERKFVGHVPDSLHVAWATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRSA 121

Query: 192 LAAEAATKAGLTCIFNVLEGFEGEIDAQQQRGKADGWRFHGLPWIQD 238
            AAEAATKAGL+CIFNVLEGFEGE+DA QQRGKADGWRFHGLPW+QD
Sbjct: 122 AAAEAATKAGLSCIFNVLEGFEGELDAAQQRGKADGWRFHGLPWVQD 168


>gi|300312429|ref|YP_003776521.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score = 89.0 bits (219), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 96  LASIQADARSSSLPYAGGVPPVLAWKLF-STRQVLLVDVRSNEERKFVGHV----PGSIH 150
           L++    A  + LPY G V P  A  L     ++ LVDVR+  ER +VG V       + 
Sbjct: 7   LSAATQRAVDAQLPYRGAVTPAEALALLEGDSRIKLVDVRTRAERDWVGVVQIAPAQHLA 66

Query: 151 VPWATGTALTRNPRFVRELESKIGGKEVVALLLCRSGKRSALAAEAATKAGLTCIFNVLE 210
           V W        NP+F+ +L  ++   + V L LCRSG RS  AA+ AT+ G T  F++LE
Sbjct: 67  VQWNLYPEGKPNPQFLEQLR-EVTNPDDVLLFLCRSGVRSKHAAKLATEHGYTHCFDILE 125

Query: 211 GFEGEIDAQQQRGKADGWRFHGLPWI 236
           GFEG  DA   R   +GW   GLPW+
Sbjct: 126 GFEGNKDAAGHRKTVEGWCKAGLPWV 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 702,241
Number of extensions: 25380
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)