BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0079.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311648|ref|YP_003775740.1| major membrane protein I [Herba...   625   e-180

>gi|300311648|ref|YP_003775740.1| major membrane protein I
           [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  625 bits (1613), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/310 (97%), Positives = 306/310 (98%)

Query: 1   MSATVGGTTALGDNAARQLANATKTVPQLETISPRWLTHLLQWVPVEAGIYRLNKVKNPE 60
           MSATVGGTTALGDNAARQLANATKT PQLETISPRWLTHLLQWVPVEAGIYRLNKVKNPE
Sbjct: 1   MSATVGGTTALGDNAARQLANATKTAPQLETISPRWLTHLLQWVPVEAGIYRLNKVKNPE 60

Query: 61  SIKVTCTAREEENQLPRTFVDYEENPREYFLNAVSTVLDVHTRVSDLYSSPHDQIKEQLR 120
           SIKVTCTAR+EENQLPRTFVDYEE PREYFLNAVSTVLDVHTRVSDLYSSPHDQIKEQLR
Sbjct: 61  SIKVTCTARQEENQLPRTFVDYEEQPREYFLNAVSTVLDVHTRVSDLYSSPHDQIKEQLR 120

Query: 121 LTIETIKENQESELINNPDYGLLAQVTDEQRIFPLTGAPTPDDLDELLTKVWKEPAFFLT 180
           LTIETIKENQESELINNPDYGLLAQVTDEQRIFPLTGAPTPDDLDELLTKVWKEPAFFL 
Sbjct: 121 LTIETIKENQESELINNPDYGLLAQVTDEQRIFPLTGAPTPDDLDELLTKVWKEPAFFLA 180

Query: 181 HPLAIAAFGREATRRGTPPPTISLFGSQFITWRGIPLIPSDKVPVADGKSKILLLRVGDK 240
           HPLAIAAFGREATRRGTPPPTISLFGSQFITWRGIPLIPSDKVPVADGKSKILLLRVGDK
Sbjct: 181 HPLAIAAFGREATRRGTPPPTISLFGSQFITWRGIPLIPSDKVPVADGKSKILLLRVGDK 240

Query: 241 RQGVVGLFQPGLPGEQSPGLSVRFMGINNHAISSYLISLYCSLAVLTTDALAVLDDVEIG 300
           RQGVVGL+QPGLPGEQSPGLSVRFMGINNHAI+SYLISLYCSLAVLTTDALAVLDDVE+ 
Sbjct: 241 RQGVVGLYQPGLPGEQSPGLSVRFMGINNHAIASYLISLYCSLAVLTTDALAVLDDVEVN 300

Query: 301 KYHDYPDTYK 310
           KYHDYPDTYK
Sbjct: 301 KYHDYPDTYK 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 957,035
Number of extensions: 38448
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)