BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0074.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 632 0.0 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 241 6e-65 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 238 8e-64 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 226 3e-60 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 218 7e-58 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/350 (88%), Positives = 327/350 (93%) Query: 1 MSIEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 MSIEV I KRFG+F ALN+VSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL Sbjct: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 Query: 61 LDGDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIREKVTSL 120 LDG+DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPR+QRPSEA IREKV L Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL 120 Query: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGSPGEVYNHPASPFVYGFLGNV 240 RLHDELHVTSIFVTHDQEEALEVADQ+VLMNKG VEQIG+P VYNHPASPFVYGFLGNV Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV 240 Query: 241 NLFHGRVHEGVLEAGGVTFDAPDHAQAQDEKGIGYVRPHDLEVDRYSPGAEGIVAQLRRS 300 NLFHGR+HEGVL+AGG F+AP H +D G+G+VRPHDL+V+RYSPGAEGIV QLRR+ Sbjct: 241 NLFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDVERYSPGAEGIVVQLRRA 300 Query: 301 HAIGPLAQLELERKDNSELIEAVISNERFAQLNLKDGETLVVRPRRLHVF 350 HAIGPLAQLELER DN+ELIEAVI NERFAQL LK+GETLVVRPRRL VF Sbjct: 301 HAIGPLAQLELERDDNAELIEAVIPNERFAQLGLKNGETLVVRPRRLQVF 350 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 241 bits (615), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 151/354 (42%), Positives = 216/354 (61%), Gaps = 14/354 (3%) Query: 3 IEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 + V+++ KRFG+F AL+ VSL GE+ LLGPSGCGKTTLLR IAGLE DSG++ D Sbjct: 13 LSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHAD 72 Query: 63 GDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIREKVTSLLE 122 G D S + R G +FQ YALF +++V +N+A+GL R S Q RE+VT +L Sbjct: 73 GRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGL------GRMSRQQKRERVTEMLS 126 Query: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 +V LD D+YP QLSGGQ+QR+ALARALA P +LLLDEP ALDA+VR+ L+ +RRL Sbjct: 127 MVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 186 Query: 183 HDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGSPGEVYNHPASPFVYGFLGNVN- 241 + +T++ VTHDQEEA+ +AD+I +M G +EQ G+P ++Y PA+PFV F+G N Sbjct: 187 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANW 246 Query: 242 LFHGRVHEGVLEAGGVTFD-APDHAQAQDEKGIGYVRPHDLEVDRYSPGAEGIVAQLRRS 300 L R+ + GG+ + PD ++ G + RP +++ A +A++ Sbjct: 247 LPFTRLSGSQVAVGGLHLEIQPD--ESDRASGRLFCRPEAVQLFSDESCANRFLARVVDR 304 Query: 301 HAIGPLAQLEL--ERKDNSELIEAVIS--NERFAQLNLKDGETLVVRPRRLHVF 350 +G +L L + L+ V S +ER A L+ +DG + + + L VF Sbjct: 305 IYLGDRYRLALAADALPGQTLLADVSSQAHERVASLDTQDGLWVTLPRQSLQVF 358 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 238 bits (606), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 141/315 (44%), Positives = 194/315 (61%), Gaps = 8/315 (2%) Query: 1 MSIEVKDINKRFGNFV-ALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD-SGQ 58 +SI + K F N AL + L GE LLGPSGCGKTT LR+IAGLE PD G+ Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 67 Query: 59 VLLDGDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIREKVT 118 VL +D + + +R VG VFQ+YALF +M+V ENIA+G++++ + + + E+V Sbjct: 68 VLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIR----KIAAGERAERVE 123 Query: 119 SLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 LLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 124 RLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 Query: 179 LRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGSPGEVYNHPASPFVYGFLG 238 L +L L +T+I+VTHDQ EA+ + D+IV+M +G + QIG+P E+Y HPA+ FV F+G Sbjct: 184 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIG 243 Query: 239 NVNLFHGRVHEGVLEAGGVTFDAPDHAQAQDEKGIGYVRPHDLEV-DRYSPGAEGIVAQL 297 +N G V L+ T P A A + RP D+EV D A + +L Sbjct: 244 AMNRVDGIVAGDRLQLPTGTLPLPPDAVA-GQPAQALFRPEDVEVIDITEADAHCLRGKL 302 Query: 298 RRSHAIGPLAQLELE 312 + +G + E+E Sbjct: 303 INTFFLGDRTRFEIE 317 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 226 bits (575), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/292 (41%), Positives = 182/292 (62%), Gaps = 14/292 (4%) Query: 2 SIEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLL 61 S++++ + K+FG+ + V ++ GE T L+GPSGCGK+TLLR++AGLE G++L+ Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 62 DGDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIREKVTSLL 121 G + ++R + VFQ+YAL+ HMTV +N+AF L + + +A + E+V Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKK----DKAFVDERVKKAA 118 Query: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 +++ L+ L DRYP QLSGGQRQR+A+ RA+ +P+V L DEP LDAK+R ++R ++ Sbjct: 119 DILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKE 178 Query: 182 LHDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGSPGEVYNHPASPFVYGFLGN-- 239 LH L TSI+VTHDQ EA+ +ADQIV+M G VEQ G P ++Y++PA+ FV GF+G+ Sbjct: 179 LHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPA 238 Query: 240 VNLFHGRVHEG-----VLEAGGVTFDAPDHA--QAQDEKGIGY-VRPHDLEV 283 +N + V A G AP A Q D + + Y VRP L + Sbjct: 239 MNFIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSI 290 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 218 bits (554), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 122/298 (40%), Positives = 186/298 (62%), Gaps = 26/298 (8%) Query: 2 SIEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLL 61 ++ ++++ KR+ + + +++L GE +GPSGCGK+TLLR+IAGLE + Sbjct: 3 AVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEE------IS 56 Query: 62 DGD-DASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIRE 115 DGD D AR + E R V VFQ YAL+ HM++++N+AFGL++ + S+A+I Sbjct: 57 DGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGK----SKAEIDA 112 Query: 116 KVTSLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 V +++ +D L DR P LSGGQRQR+A+ RA+ +P V L DEP LDA +R ++ Sbjct: 113 AVQHAAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKM 172 Query: 176 RRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGSPGEVYNHPASPFVYG 235 R +LHD+L T I+VTHDQ EA+ +AD+IV++++G +EQ+GSP ++Y+HPA+ FV G Sbjct: 173 RLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAG 232 Query: 236 FLGN--VNLFHGRV----HEGV---LEAGGVTFDAPDHAQAQ-DEKGIGYVRPHDLEV 283 F+G+ +N G V +GV L GG+ + A D + Q +K VRP L + Sbjct: 233 FIGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNI 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,138,918 Number of extensions: 47785 Number of successful extensions: 600 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 358 Number of HSP's successfully gapped: 144 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)