BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0071.p (246 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 153 1e-38 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 134 5e-33 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 90 1e-19 gi|300312613|ref|YP_003776705.1| transcription regulator protein... 87 2e-18 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 79 3e-16 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 131/223 (58%), Gaps = 14/223 (6%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 RLYR ++D+++ I E A G RLPSERDLA QL VSR S+REALIALE+ G IEVR G Sbjct: 10 RLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMG 69 Query: 77 SGIYVIEKKGAAPAIQ-------EIGPGPFEILSARCLIEGEVAAIAARMATDGALDAIL 129 SGIYV P +Q GP E++ AR +IEGEVA AA+ + + A+ Sbjct: 70 SGIYV------CPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVE 123 Query: 130 RALNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQR-GRLWIKMEEHFH 188 A M + EADR FH+ +A ATGNS LV ++ L+D R G L+ ++ HF Sbjct: 124 EAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHSHFD 183 Query: 189 TEELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTTEFS 231 + Q+ + +H ++EA+ R+PE AR AM H++ T +S Sbjct: 184 GTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYS 226 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 134 bits (338), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 124/218 (56%), Gaps = 14/218 (6%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 RLY +ADR++ + + + RLP ER LA QL VSR S+REAL+ALEL G +E+R G Sbjct: 21 RLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRMG 80 Query: 77 SGIYVIEKKGAAPAIQEIGPGP--------FEILSARCLIEGEVAAIAARMATDGALDAI 128 SG+Y+ + AAP Q+ P P +I+ AR + EG + A+ A +A + A Sbjct: 81 SGVYLTQ---AAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKA- 136 Query: 129 LRALND-MERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQR-GRLWIKMEEH 186 LRA+ D MER + DR FH+ IAR TGN LV + L+D+R + K+ +H Sbjct: 137 LRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDH 196 Query: 187 FHTEELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLE 224 + E+ L +HR ILEAI RD A+ AM HL+ Sbjct: 197 YEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLK 234 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 14 PETRLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEV 73 PE RV A + E I G +LPSE DLA +VSR VR+AL L ++E Sbjct: 29 PERFAERVYETLFHAIV-EGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 Query: 74 RGGSGIYVIEKKGAAPAIQEIGPGP-------FEILSARCLIEGEVAAIAARMATDGALD 126 GSG YV EK G APA + G P L R +IE E AA+AA LD Sbjct: 88 LRGSGTYVKEKPGLAPA--QPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLD 145 Query: 127 AILRALNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENL-WD-QRGRLWIKME 184 + R L E D FH +IA ATGN V V++ L +D ++ Sbjct: 146 RMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHL 205 Query: 185 EHFHTEELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTT 228 H + Q + +HR+I E I +D EGAR+AM H+E T Sbjct: 206 MHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENART 249 >gi|300312613|ref|YP_003776705.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 9/211 (4%) Query: 22 VADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGGSGIYV 81 VA R+ IR + ++LP ER+LAA L V R +VREA+ L L G++ +R G G +V Sbjct: 15 VAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQGEGTFV 74 Query: 82 --IEKKGAAPAIQ---EIGPGPFE-ILSARCLIEGEVAAIAARMATDGALDAILRALNDM 135 +E + ++ ++ PG E + AR +IE VAA+AA D LD + R + D Sbjct: 75 SSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDAELDRLARNVEDE 134 Query: 136 ERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQRGRLWIKMEEHFHTEELRQQ 195 R D AD FH +I A N L S+ +L+ G+ + ++ Sbjct: 135 ARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLY-MLGKKSRSITSRIPAT--LER 191 Query: 196 TLVDHRRILEAIVDRDPEGARKAMHAHLERV 226 +L DHR+IL+A+ RDP+ A +AM HL RV Sbjct: 192 SLQDHRQILDALKARDPQKASEAMRHHLMRV 222 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 19/223 (8%) Query: 14 PETRLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEV 73 P++ VVA + A I + G++LP+E ++ VSR VREA+ L+ G++E Sbjct: 17 PQSLSQEVVAA-LTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 74 RGGSGIYVIE-KKGAA----PAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAI 128 R G G +V+E KKG PA +L R +E E A +AA T+ L I Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEI 135 Query: 129 LRALNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQRGRLWIKMEEHFH 188 AL+ + D FH +IA ATGN + +I +L + + + + Sbjct: 136 REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG-----MGVIPRKRIN 190 Query: 189 TEEL---RQQTLVD-----HRRILEAIVDRDPEGARKAMHAHL 223 T EL +Q + +D H I EAI D E AR AM HL Sbjct: 191 TAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHL 233 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 775,762 Number of extensions: 31388 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 11 Length of query: 246 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 163 Effective length of database: 1,226,865 Effective search space: 199978995 Effective search space used: 199978995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)