BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0068.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 248 5e-67 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 248 7e-67 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 247 1e-66 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 237 1e-63 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 235 5e-63 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 248 bits (633), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 206/355 (58%), Gaps = 12/355 (3%) Query: 16 RFGGPAKTTDAPQIAALDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGIYL 75 +F G KT D + + L +DI RGEF+ LLGPSG GK+T L +AG + G I L Sbjct: 23 QFCGVKKTYDGENLI-VKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 81 Query: 76 DDHRIDTLPPEQRGFGMVFQNYALFPHMTVAKNVGFGLLMRGVPAAEIQTRVKRALDLVQ 135 D ++ +PP +R GMVFQNYALFPHMT+A+NV + L +R + A + +VK+ALD+VQ Sbjct: 82 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 141 Query: 136 LAQHMNKLPGQLSGGQQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGE 195 + + ++ P QLSGGQQQRVA+AR +V +P L+LMDEPL LD +LR M+ E++ +H Sbjct: 142 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 201 Query: 196 LGRTTLYVTHDQDEALSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMGYRNEL-- 253 LG T +YVTHDQ EAL+++DR+ V G +QQ+ E+Y P N VA F+G N Sbjct: 202 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKG 261 Query: 254 ILDVVGQDARTVTLAGPGVNLAGIAKMRLNGRAAVS--IRPEEFSICADGTAPDNSISAR 311 ++ V + TV L G L G+ R + +++ +RPE + A G+A NSI A Sbjct: 262 SVESVQGEHCTVRLT-DGAALTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNSIRAS 320 Query: 312 VESVEYYGRESLFMLRTQDNTRLYVR------AEGKASPGETIRVSVPADRVLAY 360 + + Y+G +V+ A S G ++ + V DR+ + Sbjct: 321 IAGLIYFGDHVRVRCTVAGQEDCFVKLSLSDPALSGLSEGSSVVLHVAQDRLRCF 375 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 248 bits (632), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 141/333 (42%), Positives = 199/333 (59%), Gaps = 26/333 (7%) Query: 8 LRLDRVTRRFGGPAKTTDAPQIAALDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLP 67 + L +V + +G K D + G+ +IA GEFI ++GPSGCGKST L +AGL Sbjct: 4 IHLKQVRKTYGAGTKAVDV-----IHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEE 58 Query: 68 LSDGGIYLDDHRIDTLPPEQRGFGMVFQNYALFPHMTVAKNVGFGLLMRGVPAAEIQTRV 127 +S G I + D ++ L P++R MVFQNYAL+PHMTV +N+ +GL ++G+ +EI RV Sbjct: 59 ISSGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARV 118 Query: 128 KRALDLVQLAQHMNKLPGQLSGGQQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRS 187 +RA +++L + + P QLSGGQ+QRVA+ RAIV +P + L DEPLSNLDAKLR++MR Sbjct: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 Query: 188 EIRRIHGELGRTTLYVTHDQDEALSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFM 247 EI+++H L T+LYVTHDQ EA++L R++VM G +QIGTP EVY +P+ VA F+ Sbjct: 179 EIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFI 238 Query: 248 G------YRNELILDVV------GQDARTVTLAGPGVNLAGIAKMRLNGRAAVSIRPEEF 295 G + +L D G + + L P AG ++ + +RPE Sbjct: 239 GSPPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERI-------LGVRPEHL 291 Query: 296 SICADGTAPDNSISARVESVEYYGRESLFMLRT 328 DG+A +S VE VE G E L R Sbjct: 292 LPILDGSAAQ--LSLEVELVEALGAELLVHARC 322 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 247 bits (630), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/335 (41%), Positives = 203/335 (60%), Gaps = 13/335 (3%) Query: 31 ALDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGIYLDDHRIDTLPPEQRGF 90 A+ + ++ G+F LLGPSGCGKST L IAGL S G I++ + LPP QR Sbjct: 18 AVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQLPPAQRKI 77 Query: 91 GMVFQNYALFPHMTVAKNVGFGLLMRGVPAAEIQTRVKRALDLVQLAQHMNKLPGQLSGG 150 MVFQ+YALFPH++V N+ FG+ +R P A +TR+KR D++ LA + + P QLSGG Sbjct: 78 SMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGLAHLLERRPAQLSGG 137 Query: 151 QQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTLYVTHDQDEA 210 QQQRVA+ RAI+ + P+ LMDEPLSNLDA+LR EMR EIR + +L T +YVTHDQ EA Sbjct: 138 QQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHDQTEA 197 Query: 211 LSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMGY--RNELILDVVGQDARTVTLA 268 +S+AD+++++++G+++Q P ++Y QP+ ARF+G N L L+ A + ++ Sbjct: 198 MSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLPLE---PHAEGLVIS 254 Query: 269 GPGVNLAGIAKMRLNGRAAVSIRPEEFSICADGTAPDNSISARVESVEYYGRESLFMLRT 328 G V L + + + +RPE + A D+S+ A VE+VEY+G +++ R Sbjct: 255 GSDVILRDLGQTPWQ----LGLRPEHIRLA---DASDSSVPAVVETVEYFGADTIIGARI 307 Query: 329 QDNTRLYVRAEGKASPGETIRVSVPADRVLAYPFE 363 L VRA G+ G V + D Y F+ Sbjct: 308 -GAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFD 341 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 237 bits (604), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 139/309 (44%), Positives = 186/309 (60%), Gaps = 22/309 (7%) Query: 32 LDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGI------YLDDHRIDTLPP 85 L G+ M++ RGE +ALLGPSG GK+T L +AGL G I D R +P Sbjct: 23 LKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPA 82 Query: 86 EQRGFGMVFQNYALFPHMTVAKNVGFGLLMRGVPAAEIQTRVKRALDLVQLAQHMNKLPG 145 E+R G+VFQ+YAL+PH TVA NV +GL +R P+ EI TRVK L + L + P Sbjct: 83 EERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGERYPH 142 Query: 146 QLSGGQQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTLYVTH 205 QLSGGQQQRVAIARA+V P +IL+DEPLSNLDAKLR E R+ +R + LG + L VTH Sbjct: 143 QLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTH 202 Query: 206 DQDEALSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMGYRNELILDVVGQDARTV 265 DQ EA++++DRI+++ +G+++Q GTP +Y P+ L A FMG N+L +V+ ++ V Sbjct: 203 DQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVLSREGERV 262 Query: 266 TLAGPGVNLAGIAKMRLNGRAAVS--------IRPEEFSICADGTAPDNSISARVESVEY 317 T+ G G A L GR+ V IR E+ I G A DN+I + + Y Sbjct: 263 TVKLDG----GTAVATLRGRSDVRPGEQLTGIIRVEQVRIS--GEASDNAIRLPLSTCMY 316 Query: 318 YG--RESLF 324 G E LF Sbjct: 317 LGDRWECLF 325 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 235 bits (599), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 126/314 (40%), Positives = 192/314 (61%), Gaps = 21/314 (6%) Query: 35 LQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGIYLDDHRIDTLPPEQRGFGMVF 94 + ++I GEF+ +GPSGCGKST L IAGL +SDG + + R++ +P +RG MVF Sbjct: 22 INLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRMNEVPASKRGVAMVF 81 Query: 95 QNYALFPHMTVAKNVGFGLLMRGVPAAEIQTRVKRALDLVQLAQHMNKLPGQLSGGQQQR 154 Q+YAL+PHM++ N+ FGL + G AEI V+ A ++ + +++ P LSGGQ+QR Sbjct: 82 QSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILHIDHLLDRKPRALSGGQRQR 141 Query: 155 VAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTLYVTHDQDEALSLA 214 VAI RAI +P + L DEPLSNLDA LR++MR E ++H +L T +YVTHDQ EA++LA Sbjct: 142 VAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLA 201 Query: 215 DRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMGYRNELILD----VVGQDARTVTLAGP 270 D+IVV+ +G+++Q+G+P ++Y P+N VA F+G +D + D V L G Sbjct: 202 DKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNFIDGTVAAIQADGVQVQLPGG 261 Query: 271 GVNLAGI--AKMRLNGRAAVSIRPEEFSICADGTAPDNSISARVESVE-----------Y 317 G+ A + + +++ + + +RPE +I A G A ++ AR ++E Y Sbjct: 262 GLQWAAVDGSTLQVGQKVTLGVRPEHLNI-AQGQA---ALQARCTALELLGDFSYLYAAY 317 Query: 318 YGRESLFMLRTQDN 331 G E +LR D+ Sbjct: 318 EGSEDALILRVPDS 331 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,191,683 Number of extensions: 51745 Number of successful extensions: 598 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 145 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)