BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0061.p
         (457 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   211   7e-56

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  211 bits (538), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 223/456 (48%), Gaps = 62/456 (13%)

Query: 5   GLFFDGTSNNKYRDEPNQA--------HTNVVKLFNAHKDIKGESYQKDSSCFRFYIPGV 56
           GLFFDGT NN    E  Q         H+NV +LF+A+ D        D+  FR Y+ GV
Sbjct: 48  GLFFDGTGNNDKWVEDGQTKNQRQRNKHSNVARLFDAYID------DPDNGFFRVYMQGV 101

Query: 57  GTRFPE-NQEWKETQE--GKAMGKGGQARILYGVLEVYNAVYQ--------AFNEGRDLY 105
           GT F E    +K   +  G   G  G  RI +G+  + NAVY         + NE RDL 
Sbjct: 102 GTPFAEIGDTFKLGTDIGGSGFGYMGADRINWGITSLLNAVYSYATGGSLFSGNEQRDLV 161

Query: 106 EPAQL----TAKLKSYTRDVE------ENYDKEYPLHERRKRWFTQLRDELNNKLQAQRD 155
               +       + +   D +        Y    P   RR   +     +L   +++ + 
Sbjct: 162 NLMSMQMLQNGNVNAMPPDWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQR 221

Query: 156 IIIQPRIPLIRVAVFGFSRGAIEARSFCYWLHAALEEKS---TLAGMPIEINFLGLFDSV 212
            ++Q     I V+VFGFSRGA EAR+ C+WLH           LAG+PI I FLG+FD+V
Sbjct: 222 KVVQ-----INVSVFGFSRGAAEARACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDTV 276

Query: 213 ASVGLPHSAAQTTPFRFIDGHFSWAAETLTPLPSLVKQTVHYIAAHEQRMNFPVTRVQGN 272
           A+VG+       TP  F  GH +WA +T + +P  V+Q  H++A HEQR +FP+    G 
Sbjct: 277 AAVGI----GDVTPVTF--GHMAWADKTQS-VPPAVEQCAHFVALHEQRASFPLESSTGW 329

Query: 273 NVQEVLYPGVHADVGGGYCPKEQGRGM-TVGQM--VSQVPLLHMHKIARLAGVPLVTYRQ 329
               V YPG+H+D+GGGY P EQG+ M + G+   +SQ+PL+ MH  A  AGVPL T  +
Sbjct: 330 T--NVGYPGMHSDIGGGYFPGEQGKSMPSWGKSPHLSQIPLIDMHFTALKAGVPLWTTGE 387

Query: 330 MASD--LQADYALSPELAANWNAYMAA-GDFAGTYEAQVREHLRMYYRFRSHWLXRMAQL 386
           + +D  L A YA  P L  ++N ++A  G  AG+       H R Y R+R         L
Sbjct: 388 INADPSLSASYATDPRLIKSYNDWLATNGIKAGSIREYTEAHTRQYLRWRGSLHEGKGGL 447

Query: 387 PA----YQRATPQEQQDIASYDALFKGDMELLRERA 418
                 YQ A   +++D+   D      +   RERA
Sbjct: 448 MLGKRFYQDAGTSDKKDMLEADVELGKMIRDWRERA 483


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,517,076
Number of extensions: 67167
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,203,190
Effective search space: 443977110
Effective search space used: 443977110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)