BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0057.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310982|ref|YP_003775074.1| EAL domain-containing protein [...   349   1e-97

>gi|300310982|ref|YP_003775074.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  349 bits (896), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 175/277 (63%), Positives = 208/277 (75%), Gaps = 14/277 (5%)

Query: 1   MKYQALEKYLARLNGPDGSGGQESKVWLDAEGRAQGKYFNTTLTSAFQPIRVFGSAGTPD 60
           M YQAL  YLARL+         S VWLD +GRA G++FNT+LTSAFQP+R F       
Sbjct: 1   MAYQALNAYLARLSK---GATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFD------ 51

Query: 61  AATPDATIVAHEGFARSYSEDDSGLHLWRLLDQAASDDESVELDRLCRMLHSINFYRQVD 120
               D  ++A E FARS+S  D GLHLW+LLDQAASDDESVELDRLCRMLH+IN+YRQV 
Sbjct: 52  ----DGQVIACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVG 107

Query: 121 YDV-SLHLSVHARLLAAVDSNHGIAFRRILNLLELPHDKIVLQMPVVTQNQGWLLNYVLD 179
            D   LHLSVHARLLAAV++NHG+A+RRIL  LELPH++IVLQ+PVVT NQ WLLNYVLD
Sbjct: 108 EDAPELHLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLD 167

Query: 180 NYRRNGFRLGISAADARDALALLEKVKPDMIKVDARELTDEEGTEKLLRQAAAHGIRVVF 239
           NYRRNGFRLG+SA    +AL LL+KV+PD+IKVDAREL D +    LL +AA  G+R+ F
Sbjct: 168 NYRRNGFRLGVSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFF 227

Query: 240 KRVENPVVFARLQDFGGKLGTPVYAQGYLWDTPKSIL 276
           KRVE+  VF RLQ +G  L  P++AQGYLWD P + L
Sbjct: 228 KRVESREVFGRLQQYGQALAQPIHAQGYLWDVPAAHL 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 875,544
Number of extensions: 33561
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)