BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0055.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporte... 329 2e-91 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 155 5e-39 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 154 1e-38 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 152 3e-38 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 150 1e-37 >gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 285 Score = 329 bits (843), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/250 (67%), Positives = 198/250 (79%), Gaps = 12/250 (4%) Query: 18 AMQNNPVETTQVKNAAEAQSGKQSRGVRVAIDGLSKSYAGREVLKAVALDVKPGEFVAIV 77 +M+N+ E QV+ AA RGV + + LSK+++GR VL + LD+ GEFVAIV Sbjct: 8 SMRNDAQENQQVRRAA-------GRGVGIRLRALSKAFSGRTVLHEIDLDIAAGEFVAIV 60 Query: 78 GRSGCGKSTLLRLIAKLETATHGEVAFAKDDDGRQAGFEPETRIMFQDSRLLPWKRVLNN 137 GRSGCGKSTLLRL+A+L+ A+ GE+ + G +PE RIMFQD+RLLPWKRV N Sbjct: 61 GRSGCGKSTLLRLVAQLDAASCGELIYEHGGSG-----QPEVRIMFQDARLLPWKRVQAN 115 Query: 138 VALGLPKAALPSASQALRQVGLEERAGEWPAVLSGGQRQRVALARALVHDPELLLLDEPL 197 VALGLP+ A P A ALRQVGL++RAGEWPAVLSGGQRQRVALARALVHDP+LLLLDEPL Sbjct: 116 VALGLPRQAAPQALHALRQVGLDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPL 175 Query: 198 GALDALTRIEMQQLIESLWQKRGFTAVLVTHDVQEAIALADRVVLIEDGNITLDQIIDLP 257 GALDALTRIEMQ LIESLW++RGFTA+LVTHDVQEAIALADRV+LIEDG + LDQ IDL Sbjct: 176 GALDALTRIEMQTLIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGRVALDQRIDLA 235 Query: 258 RPRARGFFVF 267 RPR+RG F Sbjct: 236 RPRSRGQAQF 245 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 155 bits (391), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 92/208 (44%), Positives = 122/208 (58%), Gaps = 11/208 (5%) Query: 61 LKAVALDVKPGEFVAIVGRSGCGKSTLLRLIAKLETATHGEVAFAKDDDGRQAGFEPETR 120 L+ ++ V GEFVA+VG +GCGKST L LI L T GEV G +P Sbjct: 42 LRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQPVN---GIDPRIG 98 Query: 121 IMFQDSRLLPWKRVLNNVALG-----LPKA-ALPSASQALRQVGLEERAGEWPAVLSGGQ 174 +FQ+ + PW+ V NVA G PKA A A + +R+VGL++ +P LSGG Sbjct: 99 FVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGM 158 Query: 175 RQRVALARALVHDPELLLLDEPLGALDALTRIEMQQLIESLWQKRGFTAVLVTHDVQEAI 234 R+RVALA+ ++ PE+LL+DEP ALD TR MQ + LW + V VTHD++EAI Sbjct: 159 RKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAI 218 Query: 235 ALADRVVLIEDGNITLDQI--IDLPRPR 260 ALAD+V ++ TL + IDLPRPR Sbjct: 219 ALADKVYVLTARPATLKSVYPIDLPRPR 246 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 154 bits (388), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 132/228 (57%), Gaps = 15/228 (6%) Query: 45 RVAIDGLSKSYA--GREV--LKAVALDVKPGEFVAIVGRSGCGKSTLLRLIAKLETATHG 100 R+ I G+ K + REV LK + LD+ G+FV ++G SGCGKSTLL IA + G Sbjct: 9 RIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 Query: 101 EVAFAKDDDGRQAGFEPETRIMFQDSRLLPWKRVLNNVALGLPKAALPSA------SQAL 154 ++ DD + P+ ++FQ+ L PW V NVA GL P A +Q L Sbjct: 69 QIL---TDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLL 125 Query: 155 RQVGLEERAGEWPAVLSGGQRQRVALARALVHDPELLLLDEPLGALDALTRIEMQQLIES 214 ++GL + +P LSGG RQRVA+AR L D ++L+DEP GALDALTR +Q + Sbjct: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 Query: 215 LWQKRGFTAVLVTHDVQEAIALADRVVLI--EDGNITLDQIIDLPRPR 260 +W + T V VTH ++EAI LADR+V++ G + D +++LPR R Sbjct: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLR 233 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 152 bits (384), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 11/207 (5%) Query: 44 VRVAIDGLSKSYAGREVLKAVALDVKPGEFVAIVGRSGCGKSTLLRLIAKLETATHGEVA 103 ++++ + ++K + V++ ++ GE VA+VG SGCGKSTLL + A LE + G VA Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 104 FAKDDDGRQA-GFEPETRIMFQDSRLLPWKRVLNNVALGL------PKAALPSASQALRQ 156 DG+ G PE +MFQ++ L PW + NVAL L K A A L Sbjct: 61 ----GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLEN 116 Query: 157 VGLEERAGEWPAVLSGGQRQRVALARALVHDPELLLLDEPLGALDALTRIEMQQLIESLW 216 V L+ +P +SGG RQR ALARA + P+ LLLDEP GALDALTR+ +Q + L Sbjct: 117 VKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLI 176 Query: 217 QKRGFTAVLVTHDVQEAIALADRVVLI 243 +++G T VLVTHDV EA+ LADR+ + Sbjct: 177 RQQGPTVVLVTHDVDEALFLADRIFVF 203 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 61 LKAVALDVKPGEFVAIVGRSGCGKSTLLRLIAKLETATHGEVAFAKDDDGRQAGFEPETR 120 L+ + L V GEFV ++G SGCGKSTLL LIA L + G + A + G G PE Sbjct: 30 LREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIG---GPAPERA 86 Query: 121 IMFQDSRLLPWKRVLNNVALGLPK--AALPSASQ-------ALRQVGLEERAGEWPAVLS 171 ++FQ+ LLPW N+ LG+ + A + +Q AL VGL + P +S Sbjct: 87 VVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEIS 146 Query: 172 GGQRQRVALARALVHDPELLLLDEPLGALDALTRIEMQQLIESLWQKRGFTAVLVTHDVQ 231 GG +QRV +ARAL +P++LL+DEP GALDALTR +Q + + K T V+VTHDV Sbjct: 147 GGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVD 206 Query: 232 EAIALADRVVLIEDG-NITLDQIID--LPRPRAR 262 EA+ L+DR+V++ +G T+ ++++ L RPR R Sbjct: 207 EAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDR 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 749,458 Number of extensions: 29590 Number of successful extensions: 524 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 141 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)