BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0054.p (280 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 389 e-109 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 188 4e-49 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 159 3e-40 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 139 3e-34 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 112 4e-26 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 389 bits (998), Expect = e-109, Method: Compositional matrix adjust. Identities = 219/282 (77%), Positives = 244/282 (86%), Gaps = 8/282 (2%) Query: 3 TSIASPT---VDTPRKIAAAKSSGSGSSNGFGATQL-LSWALPVGLIVVWQIAAQLGWLS 58 TS ++P V P++ A K++ F + + W LP+ L+V W++AAQ GWLS Sbjct: 2 TSASNPVAGRVAGPQEQAKPKAA----RKSFQPSHAWIGWLLPLLLLVWWEVAAQAGWLS 57 Query: 59 SRILPEPWAVLRAAWNLSVSGELWTHLGVSTGRAASGFAVGGGLGLLLGLLTGTFRQAEV 118 SRILPEP AVL+AAW LS SGELW HL VS+GRAASGFAVG GLGL+LGLL+G+ R AE+ Sbjct: 58 SRILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAEL 117 Query: 119 LLDTTLQMVRNIPALALIPLMILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLI 178 LLDTTLQMVRNIPALALIPL+ILWFGIDET+KLFLVSVGVFFP+YLNTFHGIRSVD+GLI Sbjct: 118 LLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLI 177 Query: 179 EMAKSYGLSGWPLYRDVILPGALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNA 238 EMAKSYGLSGWPLYRDVILPGALP+ILVG+RFALGLVWVLLIVAETISAQAGIGYMTMNA Sbjct: 178 EMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNA 237 Query: 239 REFLQTDVVLVGILLYALLGKLADVLARSLEKFWLRWHPGYQ 280 REFLQTDVVLVGILLYALLGKLAD AR LE+FWLRWHPGYQ Sbjct: 238 REFLQTDVVLVGILLYALLGKLADTAARWLERFWLRWHPGYQ 279 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 188 bits (477), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 105/266 (39%), Positives = 162/266 (60%), Gaps = 2/266 (0%) Query: 13 PRKIAAAKSSGSG--SSNGFGATQLLSWALPVGLIVVWQIAAQLGWLSSRILPEPWAVLR 70 P + A++ G + + + W +P+ +++ + A+L + +R+LP P + Sbjct: 2 PTSTSTARTHRRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAH 61 Query: 71 AAWNLSVSGELWTHLGVSTGRAASGFAVGGGLGLLLGLLTGTFRQAEVLLDTTLQMVRNI 130 W+L+ GEL H+ S R A+GF +G L + LGLL G R+AE LL+ + Q +R I Sbjct: 62 TLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAI 121 Query: 131 PALALIPLMILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLIEMAKSYGLSGWP 190 P+LA IPL++LW GIDET K+ L+++G FFP+YLN GIR +D LIE+ + GL+ Sbjct: 122 PSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQA 181 Query: 191 LYRDVILPGALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVG 250 L ++LP +LP + G+R L L W+ L+ AE I+A G+GY+ + RE + D+VL Sbjct: 182 LIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAA 241 Query: 251 ILLYALLGKLADVLARSLEKFWLRWH 276 IL+ ALLGKL+D L R++E+ L W Sbjct: 242 ILILALLGKLSDGLLRAVEQKSLGWR 267 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 152/260 (58%), Gaps = 21/260 (8%) Query: 40 LPVGLIVVWQIAAQLGWLSSRILPEPWAVLRA-------------------AWNLSVSGE 80 +P+ +I +W+ A++ GW++ +ILP PWAVLR AW + SGE Sbjct: 15 VPIIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAW--AFSGE 72 Query: 81 LWTHLGVSTGRAASGFAVGGGLGLLLGLLTGTFRQAEVLLDTTLQMVRNIPALALIPLMI 140 L S R +GF +G GL L LGLL G+ ++ L++ T+Q++R IP +A IPL I Sbjct: 73 LVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAI 132 Query: 141 LWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLIEMAKSYGLSGWPLYRDVILPGA 200 LWFG+ LFL+S+G FFP+ +NT G+R VD + A++ G S L+ V+LP A Sbjct: 133 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAA 192 Query: 201 LPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKL 260 +P IL GVR +G ++++IVAE I+ G+G+ M ARE+ +D ++ G++ LLG Sbjct: 193 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 252 Query: 261 ADVLARSLEKFWLRWHPGYQ 280 D+ L + LRWH G + Sbjct: 253 IDLGMSRLNNYMLRWHRGLE 272 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 139 bits (350), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/275 (36%), Positives = 147/275 (53%), Gaps = 8/275 (2%) Query: 6 ASPTVDTPRKIAAAKSSGSGSSNGFGATQLLSWALPVGLIVVWQIAAQLGWLSSRILPEP 65 A D P + +S G G+T +S A + ++ +W + AQ GW+ LP P Sbjct: 20 AQAQADQPPPLVKMRSFGIAE----GSTARISIAAGIVILALWWLIAQTGWVPHLFLPTP 75 Query: 66 WAVLRAAWNLSVSG----ELWTHLGVSTGRAASGFAVGGGLGLLLGLLTGTFRQAEVLLD 121 VL+ A ++ G L H+G S R + + LG+ +GLL G R + +LD Sbjct: 76 AEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGLNRWVKGVLD 135 Query: 122 TTLQMVRNIPALALIPLMILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLIEMA 181 T ++ +P LA +PLMI+W GI E SK+ L+++ +F P+ L+ G+RS+ + + A Sbjct: 136 TPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAA 195 Query: 182 KSYGLSGWPLYRDVILPGALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREF 241 S G + W L +V+LP ALP IL G+R ALG+ W L+ AE I++ GIGYM M+A F Sbjct: 196 LSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHF 255 Query: 242 LQTDVVLVGILLYALLGKLADVLARSLEKFWLRWH 276 L TD V VGI L A R LE+ + W Sbjct: 256 LATDAVFVGIALIATCAFAFSYGMRLLERALVPWK 290 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 42 VGLIVVWQIAAQLGWLSSRILPEPWAVLRAAWNLSVSGELWTHLGVSTGRAASGFAVGGG 101 VG +V+WQ+ + S LP AA L G L + S+GR +G+ G Sbjct: 23 VGGLVLWQLVSLTT--SPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVV 80 Query: 102 LGLLLGLLTGTFRQAEVLLDTTLQMVRNIPALALIPLMILWFGIDETSKLFLVSVGVFFP 161 +G+ LG+ G F LLD ++ R IP +A + L ++W G E SK+ L+ F Sbjct: 81 IGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFI 140 Query: 162 IYLNTFHGIRSVDKGLIEMAKSYGLSGWPLYRDVILPGALPSILVGVRFALGLVWVLLIV 221 + LNT G+++V+ + A S G W + VILP +P ++ G R A+G ++ ++ Sbjct: 141 VTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVS 200 Query: 222 AETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAR 266 AE +SA+ G+G + AR F +T+ V VGI+ +LG L D + R Sbjct: 201 AEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLR 245 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,352 Number of extensions: 30754 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 17 Length of query: 280 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 196 Effective length of database: 1,222,130 Effective search space: 239537480 Effective search space used: 239537480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)