BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0049.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310974|ref|YP_003775066.1| transcription regulator protein... 479 e-136 gi|300309916|ref|YP_003774008.1| transcription regulator protein... 85 6e-18 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 79 5e-16 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 78 9e-16 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 76 3e-15 >gi|300310974|ref|YP_003775066.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust. Identities = 236/256 (92%), Positives = 246/256 (96%) Query: 1 MKKEAHDETGAISIQVIERMVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVK 60 MKKEA + ISIQVIERMVSLLDALA YPDPVSLKELSAAT LHPSTAHRILNDLVVK Sbjct: 1 MKKEAGETEQHISIQVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVVK 60 Query: 61 RFVDRSEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIV 120 RFVDR EPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQ+DEIV Sbjct: 61 RFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIV 120 Query: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSIT 180 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLS+DDPK VR+YATRTGLAGHNKNSIT Sbjct: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSIT 180 Query: 181 DLSKLERELSMVRALGYARDNEELELGVRCMAAGIRDDSGKLVAGLSISAPADRLQEDWV 240 DL+KLERELSMVRALGYARDNEELELGVRCMAAGI DDSGKLVAGLSISAPADRLQ++WV Sbjct: 181 DLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWV 240 Query: 241 EDLVTTAAQISSALGF 256 EDLV+TA+QISSALG+ Sbjct: 241 EDLVSTASQISSALGY 256 >gi|300309916|ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 84.7 bits (208), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 115/232 (49%), Gaps = 14/232 (6%) Query: 33 PVSLKELSAATKLHPSTAHRILNDLVVK-RFVDRSEPGTYRLGMRLLELGNIVKSRLSVR 91 P+++ +L+A + T +RIL L+ + V+ Y +G RL+ L + R +R Sbjct: 36 PLNIAQLAALSGYPRPTVYRILAALMAEGMVVENPRNKQYEVGPRLINLASRAWDRSDIR 95 Query: 92 EAALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFSERSGMQVVRA---IGGRAPLHLTS 148 A++ +R L T +T++L+V +VYI++ S Q VR IG R L+ +S Sbjct: 96 TTAIESLRQLRDLTRETVHLAVPSDHSMVYIEKLESP----QAVRMDSRIGTRVTLYSSS 151 Query: 149 TGKLFLSIDDPKAVRSYATRT-GLAGHNKNSITDLSKLERELSMVRALGYARDNEELELG 207 GK +L+ + +A R RT L N+ T+L+ L ++ RA GYA D EE E Sbjct: 152 VGKAYLAGLE-EAHRERLMRTLHLQAFTANTHTELAALRADVEDTRARGYAEDREENEAQ 210 Query: 208 VRCMAAGIRDDSGKLVAGLSISAPADR----LQEDWVEDLVTTAAQISSALG 255 + C A I G VA +S+S P R Q+ +V+ L+ A IS L Sbjct: 211 IFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVQPLLQACATISRKLA 262 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 34 VSLKELSAATKLHPSTAHRILNDLVVKRFVDRSEPGTYRLGMRLLELGNIVKSRLSVREA 93 +S E++ L S A R L LV + S+ + L RLL LG V A Sbjct: 37 LSASEVAERVGLTRSAARRYLLTLV-HTGMAASDGKKFWLMPRLLNLGQSYLESARVPRA 95 Query: 94 ALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFSERSGMQVVRA---IGGRAPLHLTSTG 150 + F++ L ++ ++ N S+ DEIVY+ R + Q+V A G R P + T+ G Sbjct: 96 VVPFLQRLTQQLQESTNFSLLDGDEIVYVTRV----TAAQLVNAGFEPGTRLPAYTTTAG 151 Query: 151 KLFLSIDDPKAVRSYATRTGLAGHNKNSITDLSKLERELSMVRALGYARDNEELELGVRC 210 ++ L + + +++Y R L H ++TD + L +E+ +R GY + E+G+R Sbjct: 152 RVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTMRRQGYGITENQFEMGMRG 211 Query: 211 MAAGIRDDSGKLVAGLSISA 230 +A +++ +G+++ LS+++ Sbjct: 212 IAIAVKNRNGRVIGALSVTS 231 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 77.8 bits (190), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 15 QVIERMVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVKRFVDRSEPGT--YR 72 Q +E+ +++L A ++L ++++AT + S+A R+++ L ++ + P T Y+ Sbjct: 15 QSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICK-HPKTRRYQ 73 Query: 73 LGMRLLELG-NIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFSERSG 131 L +++E+G N + + + V + A F+ L T +T+NL+ E+VY+ R F Sbjct: 74 LTPKVMEVGYNYLAADILV-DVANPFLSELANITGETVNLTEPYDGEMVYVAR-FVASKF 131 Query: 132 MQVVRAIGGRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSITDLSKLERELSM 191 + + IG R P++ T++G+ +LS +P+ ++ + H ++ TD+ + + L+ Sbjct: 132 IPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAA 191 Query: 192 VRALGYARDNEELELGVRCMAAGIRDDSGKLVAGLSISAPADR 234 R G+A + EEL LG +A+ + + K VA + + AP R Sbjct: 192 SRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSR 234 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 2/209 (0%) Query: 34 VSLKELSAATKLHPSTAHRILNDLVVKRFVDRSEPGTYRLGMRLLELGNIVKSRLSVREA 93 +++ ++S T + + R L+ L + D S+ + L ++L LG S + + Sbjct: 36 LTIAQISQKTGIPRAAVRRCLHTLKQLGYAD-SDVNNFSLRPKILTLGYSYLSSTPLTVS 94 Query: 94 ALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLF 153 A ++ + R ++ +L+V E++Y+ RS + R M V G R P + TS G+ Sbjct: 95 AQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRV-MSVALNTGSRLPAYCTSLGRAM 153 Query: 154 LSIDDPKAVRSYATRTGLAGHNKNSITDLSKLERELSMVRALGYARDNEELELGVRCMAA 213 L+ +++Y + L + ++ +L L+ VRA GYA +EELE+G+R +A Sbjct: 154 LAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAV 213 Query: 214 GIRDDSGKLVAGLSISAPADRLQEDWVED 242 +R SG ++A L++ A A R+ +E+ Sbjct: 214 PVRGASGNVLAALNVGAQAARVSVAQMEE 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 760,844 Number of extensions: 28700 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 7 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)