BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0048.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidas...   545   e-156
gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...   213   2e-56

>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  545 bits (1403), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/372 (78%), Positives = 323/372 (86%), Gaps = 6/372 (1%)

Query: 1   MLKSALAAVATALLVLVGTSSVQAQTSPNSKKTAVKKAVIKKNVVHRRPVAAPKRATQAS 60
           M+KSALA + + L +  G +   AQT  N+ K  VKKAV K+     +PV+  +   + S
Sbjct: 1   MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKPVKKAVAKRAA---QPVS--RTVAKGS 55

Query: 61  LDRREKLVKKVAVVHGKRRVVYQRVAAMPTVPVVPPVMTAGDMAGLNLTQDPLALRSNVA 120
           L+ REKLV+KV VV GKR+V YQRV+A P+VPVVPPVMTAGDMAGLNLT DPLALRSNVA
Sbjct: 56  LNNREKLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVA 115

Query: 121 LVIDQASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQNMEEILTVSDDDVDRQKHSSS 180
           LVIDQA+SQVLFEKNS VALPIASVTKLMT+LVVVEARQNMEE+LTV+DDDVDR+KHSSS
Sbjct: 116 LVIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSS 175

Query: 181 RLRVGAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVD 240
           RLRVGA LSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDT YVD
Sbjct: 176 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVD 235

Query: 241 STGLSSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYASSNRLVASKDW 300
           STGLSS NVASARDLAKLVVAAYNYPIIRQYSTD KYMVEPSGHALQY SSNRL ++K+W
Sbjct: 236 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEW 295

Query: 301 DIGLQKTGYINEAGHCLVMLTKIEGRSVVMVFLDSKGKLSHVGDAARMRKWLSEQGPQNL 360
           DIGLQKTG+INEAGHCLVM T+IEGR +VMVFLDSKG+LSHVGDAARMRKWL +  P NL
Sbjct: 296 DIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNL 355

Query: 361 TRVNLRARADEG 372
           TR+ +  RADEG
Sbjct: 356 TRMKM-VRADEG 366


>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/234 (49%), Positives = 158/234 (67%), Gaps = 2/234 (0%)

Query: 122 VIDQASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQ-NMEEILTVSDDDVDRQKHSSS 180
           V+D+ +   LFE+N+    PIASVTKLMT++V ++ +Q  M   L V++DD+D  K + S
Sbjct: 148 VLDEQTGTPLFERNADTVAPIASVTKLMTAIVWLDQKQLAMGNRLEVTEDDLDTLKFTHS 207

Query: 181 RLRVGAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVD 240
           RL VGA LSR DMLHIALMSSENRAA+AL R+YPGG PAF+AAMNA+A++LGM  TH+ +
Sbjct: 208 RLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTHFEN 267

Query: 241 STGLSSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYASSNRLVASKDW 300
           +TGLS  NV++ R+LA LV AA  Y +IR  S D + M+      LQY +SNRL+     
Sbjct: 268 ATGLSPENVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 327

Query: 301 DIGLQKTGYINEAGHCLVMLTKI-EGRSVVMVFLDSKGKLSHVGDAARMRKWLS 353
           +  +QKTG+INE+GH +V+   + + R V++  L S        D  R+ KWL+
Sbjct: 328 NASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWLN 381


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 852,227
Number of extensions: 29069
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)