BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0042.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum ser...   237   6e-64

>gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  237 bits (605), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 125/145 (86%)

Query: 1   LRAYYSDHFVLPLPVGHRFPMIKYRLIREGAARAVADLEFHEAQAATDGVLALAHHPRYV 60
           ++AYYSDHFVLPLP GHRFPM+KYR+IREGAAR V  LEFHEA  A+DG LALAHHP Y+
Sbjct: 16  VKAYYSDHFVLPLPPGHRFPMVKYRMIREGAARTVPGLEFHEAMPASDGELALAHHPDYI 75

Query: 61  DLVSRGALPEQVQKDIGFPWSPEMVERSRRSAGATIAACRSALEQGVAINLAGGTHHAYA 120
              SRG L    Q++IGFPWSPEMVERSRRS+GATIAACR+A  +GVA+NLAGGTHHAY 
Sbjct: 76  GRASRGELTAAEQREIGFPWSPEMVERSRRSSGATIAACRAAFSEGVAVNLAGGTHHAYG 135

Query: 121 DRGAGFCVFNDAAVASRLMQAERRA 145
           D GAGFCVFNDAA+A+RLMQAERRA
Sbjct: 136 DHGAGFCVFNDAAIAARLMQAERRA 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.131    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 638,039
Number of extensions: 22983
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)