BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0040.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310967|ref|YP_003775059.1| molybdopterin biosynthesis enzy...   453   e-129

>gi|300310967|ref|YP_003775059.1| molybdopterin biosynthesis enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score =  453 bits (1165), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/265 (82%), Positives = 237/265 (89%)

Query: 1   MAIGLIIIGDEILSGKRVDKHFPKVLELLTARGLQLAWAEYVGDDPERITNTLRRTFASE 60
           MA GLIIIGDEILSG+RVDKHFPKVLELL+ RGLQL+WAEYVGDD ERIT TL+RT AS 
Sbjct: 1   MAFGLIIIGDEILSGRRVDKHFPKVLELLSQRGLQLSWAEYVGDDRERITATLKRTLASN 60

Query: 61  DIVFCTGGIGATPDDHTRQCAAAALGVELALHADAKVKIQERIADTAREAGITPVFDAPE 120
           D+VFCTGGIGATPDDHTRQCAAAALGV LALH +AK KIQERIAD AREAG TP FDAPE
Sbjct: 61  DVVFCTGGIGATPDDHTRQCAAAALGVSLALHPEAKEKIQERIADMAREAGSTPDFDAPE 120

Query: 121 NLHRLKMGEFPVGSSIIPNPFNKIPGFFVPNVSGEGAHYFAPGFPVMAWPMFEWVLDTHY 180
           N HRLKMGEFP G+SIIPNP+NKIPGF + N  G+GAHYFAPGFPVMAWPMFEWVLDTHY
Sbjct: 121 NQHRLKMGEFPQGASIIPNPYNKIPGFSLKNPGGQGAHYFAPGFPVMAWPMFEWVLDTHY 180

Query: 181 AHLFHRVARAEKSVLVFDMPESTLTPLMEAIEAEFALVKVFSLPHVGDDKTRRHIDLGVK 240
           A  FHR A AE+S+LVF+  ESTLTPLMEAIEA+F LVKVFSLPHVGD+KTRRHIDLGVK
Sbjct: 181 ADQFHRQAWAERSMLVFEAMESTLTPLMEAIEAQFPLVKVFSLPHVGDEKTRRHIDLGVK 240

Query: 241 GEPAQVEDAFRKMEEGLRQLKADYQ 265
           G+PAQVE AF KM+EGLR L+A+YQ
Sbjct: 241 GDPAQVEPAFEKMQEGLRSLRAEYQ 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 921,157
Number of extensions: 40851
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)