BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0035.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310963|ref|YP_003775055.1| signal peptide protein [Herbasp...   514   e-147

>gi|300310963|ref|YP_003775055.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  514 bits (1325), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 241/297 (81%), Positives = 270/297 (90%)

Query: 1   VVVLNSGDATVTLLDQSTYKEINTFSVGKEPHHLMATPDNKSLIVASATGNQLIFLDPKT 60
           VVVLNSGDA+V+LLD++  KE++TFSVGKEPHHLMATPDNKSLIVASATGNQL+FLDPKT
Sbjct: 31  VVVLNSGDASVSLLDETGEKELSTFSVGKEPHHLMATPDNKSLIVASATGNQLLFLDPKT 90

Query: 61  GEVQRQLRGIIDPYQIGFSPDQKWFIANGLRLDRVDVYRYDGHNLDLAKRVRLAKTPSHI 120
           G VQR++R IIDPYQIGF+PDQKWF+A GLRLDRVDVY YDG +L L+KR+ L KTPSHI
Sbjct: 91  GAVQRKIRDIIDPYQIGFTPDQKWFVATGLRLDRVDVYSYDGQDLKLSKRIPLPKTPSHI 150

Query: 121 AFDAASTTAFITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKYLLVGIMGKDY 180
           AFD ASTTAFITQQGS++ISAIDLATQQVKWTMPVGKLPAGI MTPDNKYL+VGIMG DY
Sbjct: 151 AFDNASTTAFITQQGSDQISAIDLATQQVKWTMPVGKLPAGIIMTPDNKYLMVGIMGADY 210

Query: 181 VQVIDWRTQKTVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINILDLQTLESVGVISVP 240
           V+VIDWRTQK VK I+TG GAHNFR  GDKR+VYVSNRV+NTI+++D+ TLE+VG I VP
Sbjct: 211 VEVIDWRTQKIVKKIKTGVGAHNFRGQGDKRFVYVSNRVANTISVVDMTTLENVGTIKVP 270

Query: 241 GGPDCMEVTDDGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGIYFINRAADL 297
           GGPDCMEVT DGKTMW TLRWVKKVAVIDLAS+ +TK+IPVGRSPHGIY  NRA DL
Sbjct: 271 GGPDCMEVTSDGKTMWATLRWVKKVAVIDLASRSVTKVIPVGRSPHGIYLHNRAPDL 327



 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 111 VRLAKTPSHIAFDAASTTAFITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKY 170
           +R A   + +A  A +    +   G   +S +D   ++   T  VGK P  +  TPDNK 
Sbjct: 13  LRAACVSAVLAVSAHANVVVVLNSGDASVSLLDETGEKELSTFSVGKEPHHLMATPDNKS 72

Query: 171 LLVGIMGKDYVQVIDWRTQKTVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINI--LDL 228
           L+V     + +  +D +T    + IR     +      D+++   +    + +++   D 
Sbjct: 73  LIVASATGNQLLFLDPKTGAVQRKIRDIIDPYQIGFTPDQKWFVATGLRLDRVDVYSYDG 132

Query: 229 QTLESVGVISVPGGPDCMEVTDDGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGI 288
           Q L+    I +P  P  +   +   T ++T +   +++ IDLA++++   +PVG+ P GI
Sbjct: 133 QDLKLSKRIPLPKTPSHIAFDNASTTAFITQQGSDQISAIDLATQQVKWTMPVGKLPAGI 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 945,974
Number of extensions: 38004
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)