BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0030.p
         (503 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310959|ref|YP_003775051.1| NA+/H+ antiporter permease [Her...   622   e-179

>gi|300310959|ref|YP_003775051.1| NA+/H+ antiporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 476

 Score =  622 bits (1605), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 347/476 (72%), Positives = 390/476 (81%), Gaps = 2/476 (0%)

Query: 27  QGPTLRTKLLTPSAGLGLALMLPQLAHAADLDGGALSALWGIPFIGLLLSIALGPLLFTH 86
            G  L T++  P      AL+LP    +A+LDG  LS  W IPF G+LLSIA+ PLL   
Sbjct: 3   SGRHLLTRIPAPFLFALCALLLPLPGWSAELDGAGLSLAWAIPFAGVLLSIAVLPLLMPA 62

Query: 87  FWHHHFGKIALAWGAAFLLPFAATFGVHTAAAGTVHALLAEYIPFIALLTALFVVAGGIC 146
            WHHHFGKIA AW  AFLLPFAA  G H A A +VHAL+AEY+PFI LLTALF VAGGIC
Sbjct: 63  LWHHHFGKIAAAWALAFLLPFAALHGAHAALAISVHALVAEYLPFIILLTALFTVAGGIC 122

Query: 147 VRGNLHGTPALNTGLLALGTVLASIMGTTGASMLLIRPLIRANDNRKHAVHIVVFFIFLV 206
           VRGNLHGTP LNTGLLALGT+LASIMGTTGA+MLLIRPLIRAND+RKH VH+VVFFIFLV
Sbjct: 123 VRGNLHGTPGLNTGLLALGTLLASIMGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLV 182

Query: 207 ANAGGSLTPLGDPPLFLGFLKGVDFFWTMQNIFPETLFVCVSLLAIFYLLDLHYYKNKEE 266
           ANAGGSLTPLGDPPLFLGFLKGVDFFWT +++     F+C +LL IFY LD H+Y N+EE
Sbjct: 183 ANAGGSLTPLGDPPLFLGFLKGVDFFWTARHLLGPMAFLCGALLLIFYGLDRHFYLNREE 242

Query: 267 ALPPALDPTPDSGISFEGKFNFVLLLAVIALVLMSGFWKSGVVFDVMGTPVELQNLLRDL 326
             P  LDPTPDS    EG+ NF+LL AV+ LVLMSG WK GV  ++MG P+E QNLLRD 
Sbjct: 243 RRP--LDPTPDSAWQLEGRVNFLLLGAVVGLVLMSGLWKPGVATELMGAPLEWQNLLRDG 300

Query: 327 ALVAIIVISLWSTPTSARAGNDFSWGPIVEVAKLFAGIFITIIPVIAMLRAGEEGAFGAV 386
           AL+ +I++SLW TP SAR+GN+F WGP++EV KLFA IF+TI PVIAMLRAGE+GAF AV
Sbjct: 301 ALLGVILVSLWLTPKSARSGNEFGWGPMLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAV 360

Query: 387 VRAVTGPDGQPVDAMYFWITGLLSSFLDNAPTYLVFFNTASGDAHTLMTTLSSTLAAISA 446
           VRAVTGPDG+P D MYFW+TGLLSSFLDNAPTYLVFFNTASGDA  LM  L+STLAAISA
Sbjct: 361 VRAVTGPDGKPDDVMYFWMTGLLSSFLDNAPTYLVFFNTASGDARELMGPLASTLAAISA 420

Query: 447 GAVFMGANSYIGNAPNMMVKAIAEERGIRMPSFFGYMAWSLVILVPLFVIMTFLFF 502
           GAVFMGANSYIGNAPNMMVKAIAEERGIRMPSFFGYMAWS  IL PLF++M+FLFF
Sbjct: 421 GAVFMGANSYIGNAPNMMVKAIAEERGIRMPSFFGYMAWSAGILAPLFIVMSFLFF 476


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,386,740
Number of extensions: 52115
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,198,455
Effective search space: 496160370
Effective search space used: 496160370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)