BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0029.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310958|ref|YP_003775050.1| nicotinate phosphoribosyltransf...   725   0.0  
gi|300313859|ref|YP_003777951.1| nicotinic acid phosphoribosyltr...   414   e-117

>gi|300310958|ref|YP_003775050.1| nicotinate
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 402

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/390 (87%), Positives = 363/390 (93%)

Query: 1   MIISSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNDNVDLTPYIDEIKAEIAALCRLR 60
           MII+SLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRN+NVDL PY+DEI+AEIAALCRLR
Sbjct: 12  MIITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNENVDLRPYVDEIRAEIAALCRLR 71

Query: 61  FRESELAYLRSFRFIKSDFVDFLDLFHLNEKYISVTPSPAGNGEIEIQVKGPWLHTILFE 120
           F+E EL YLRS RFIKSDFVDFLDLFHLNEKYI+V P PAGNGEIEI VKGPWLHTI+FE
Sbjct: 72  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISVKGPWLHTIMFE 131

Query: 121 VPVLAIVNEVYFRATQRAPDYETGRARLRDKIALLTDNSLLEGCKIADYGTRRRFSRSWH 180
           VPVLAIVNEVYFRATQR+PD E GRARLR K++++TD+  L GCKIADYGTRRRFSRSWH
Sbjct: 132 VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCKIADYGTRRRFSRSWH 191

Query: 181 AEVILAMKEHMGSHFAGTSNVQFAMQHDLTPLGTMAHEYLQACQALGPRLRDSQIYGFEM 240
           AEVI  MK+HMG HFAGTSNV +AMQHDLTPLGTMAHEYLQACQALGPRLRDSQ + FEM
Sbjct: 192 AEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTFAFEM 251

Query: 241 WAREYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFEWGERLLKHYDNNRV 300
           WAREYRGDLGI LSDVYGMDAFLRD+DMYFCKLFDGARHDSGDPFEWGERL++HY +NRV
Sbjct: 252 WAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYRDNRV 311

Query: 301 DSKSKVLVFSDGLDFDKVVSLYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVRCNGQ 360
           D  SKVLVFSD LDFDKV +LYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVRCNGQ
Sbjct: 312 DPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVRCNGQ 371

Query: 361 PVAKLSDTPAKNMCDDEAYVKYLRQVFEIK 390
           PVAKLSDTP+KNMCDD AYV YLRQVF+IK
Sbjct: 372 PVAKLSDTPSKNMCDDPAYVNYLRQVFQIK 401


>gi|300313859|ref|YP_003777951.1| nicotinic acid
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 400

 Score =  414 bits (1064), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/393 (52%), Positives = 262/393 (66%), Gaps = 8/393 (2%)

Query: 2   IISSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNDNV-DLTPYIDEIKAEIAALCRLR 60
           ++ SLL+TDLYKFTM Q +LH  PGAQ EY F CRN     L    ++++ E+  LC LR
Sbjct: 4   VVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPAFPLAELKEDVERELDHLCCLR 63

Query: 61  FRESELAYLRSFRFIKSDFVDFLDLFHLNEKYISVTPSPAGNGEIEIQVKGPWLHTILFE 120
            R  EL YL   R++KSDF+DFL LF    K+I V+        + I  +GP +H + FE
Sbjct: 64  LRPEELDYLAQLRYMKSDFIDFLALFRFQRKFIEVSTD---GDRLCIVARGPQVHVMGFE 120

Query: 121 VPVLAIVNEVYFRATQRAPDYETGRARLRDKIALL----TDNSLLEGCKIADYGTRRRFS 176
           + VL IVNE+YFR    A   +  R RL+DKIALL    ++ +     +  D+G RRR+S
Sbjct: 121 IFVLYIVNELYFRRVGHAGALDEARRRLQDKIALLKSFASEPAGRHPFEFFDFGVRRRYS 180

Query: 177 RSWHAEVILAMKEHMGSHFAGTSNVQFAMQHDLTPLGTMAHEYLQACQALGPRLRDSQIY 236
            +W  EV+  +   +  +F G+SNV  AMQ+ L P+GTMAHEYLQ+ Q+ G RLRD Q  
Sbjct: 181 GAWQEEVVATLAREVPQYFKGSSNVWLAMQYQLVPIGTMAHEYLQSYQSFGVRLRDFQKA 240

Query: 237 GFEMWAREYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFEWGERLLKHYD 296
             E W +EYRGDLG+AL+DV GMDAFL DFD+YF KLFDG RHDSGDPFEWGE+ L HY 
Sbjct: 241 ALEAWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300

Query: 297 NNRVDSKSKVLVFSDGLDFDKVVSLYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVR 356
             R+D+ +K LVFSDGLD  + + LY  F DRA   FG+GTNL+ND G TPL +VMK+  
Sbjct: 301 KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGITPLNIVMKLSS 360

Query: 357 CNGQPVAKLSDTPAKNMCDDEAYVKYLRQVFEI 389
           CNGQ VAKLSD+P K +C DE ++ YLRQ+F I
Sbjct: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGI 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,181,460
Number of extensions: 49120
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)