BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0025.p (360 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoredu... 641 0.0 gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu... 70 2e-13 gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s... 63 4e-11 >gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 357 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/359 (89%), Positives = 340/359 (94%), Gaps = 4/359 (1%) Query: 2 DNFKIAAADAGKTTPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLANVGGQCVELY 61 +N + AAA+ I+ DAVI+GAGPVGLFQVFELGLLEIKAHVIDSL VGGQCVELY Sbjct: 3 NNVQTAAANG----VIDADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELY 58 Query: 62 PDKPIYDIPAVPVCTGQELTDNLLKQIEPFDPTFHLGQEVTVVQKREDGRFDLETSAGTK 121 PDKPIYDIPAVPVCTGQELTDNLLKQIEPF PTFHLGQEVT+V KREDGRFD+ETS GTK Sbjct: 59 PDKPIYDIPAVPVCTGQELTDNLLKQIEPFSPTFHLGQEVTLVNKREDGRFDVETSTGTK 118 Query: 122 FITKTIFIAAGVGSFQPRTLKVDGIEAFDGSQLFYRVKDPAQFEGKNIVICGGGDSALDW 181 FITKTIFIAAGVGSFQPRTLKV+GIE F+GSQ+FYRVKDPA FEGKNIVICGGGDSALDW Sbjct: 119 FITKTIFIAAGVGSFQPRTLKVEGIEQFEGSQVFYRVKDPALFEGKNIVICGGGDSALDW 178 Query: 182 ALNFVGKAESVVLLHRREEFRAAPASVAKMKELCEQYEMQLIVGQATGFEAKDGKLSEIK 241 ALNFVGKAESV+LLHRREEFRAAPASVAKMKELCEQYEMQL++GQ TG E KDGKL+E+K Sbjct: 179 ALNFVGKAESVILLHRREEFRAAPASVAKMKELCEQYEMQLLIGQVTGTEIKDGKLAEVK 238 Query: 242 VTGADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLDIERKQLKVVDTEKFETNVPGIFAVG 301 VTGADGVTRRLPLDMLLVFFGLSPKLGPIAEWGL+IERKQLKV+DTEKFETNVPGIFAVG Sbjct: 239 VTGADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKVMDTEKFETNVPGIFAVG 298 Query: 302 DINTYPGKKKLILSGFHEAALAAFGAAPYIFPEKKIHMQYTTTSPKLHKILGVETPVFD 360 DINTYPGKKKLILSGFHEAALAAFGAAPYIFPEKKIHMQYTTTSPKLHKILGVE+PVFD Sbjct: 299 DINTYPGKKKLILSGFHEAALAAFGAAPYIFPEKKIHMQYTTTSPKLHKILGVESPVFD 357 >gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/332 (25%), Positives = 144/332 (43%), Gaps = 32/332 (9%) Query: 13 KTTPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLANVGGQCVELYPDKPIYDIPAV 72 TTP +I+G+GP G + + +A++ L Q +L + + P Sbjct: 2 STTPKHAKVLILGSGPAG----YSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGD 57 Query: 73 PV-CTGQELTDNLLKQIEPFDPTFHLGQEVTVVQKREDGRFDLETSAGTKFITKTIFIAA 131 P+ G EL LL+ E F T K + F L +G ++ + IA Sbjct: 58 PLGVQGPELMQRLLQHAERFKTEIIFDHIHTT--KLSERPFRLIGDSG-EYTADALIIAT 114 Query: 132 GVGSFQPRTLKVDGIEAFDGSQLFYRVK-DPAQFEGKNIVICGGGDSALDWALNFVGKAE 190 G + + L + +AF G + D + GK + + GGG++A++ AL A Sbjct: 115 GASA---QYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIAS 171 Query: 191 SVVLLHRREEFRAAPASVAKM------KELCEQYEMQL--IVGQATGFEAKDGKLSEIKV 242 V ++HRR++FRA P + ++ ++ Q+ L +VG +G +IK Sbjct: 172 KVTIIHRRDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTG-----IKIKS 226 Query: 243 TGADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLDIERKQLKV-VDTEKF--ETNVPGIFA 299 T D +T +P+ L + G P I E L ++ LK TE F T++ G+FA Sbjct: 227 TQDDAIT-EIPVHGLFIAIGHKPNT-SIFEGQLSMQNGYLKTRTGTEGFATATSIDGVFA 284 Query: 300 VGDINTYPGKKKLILSGFHEAALAAFGAAPYI 331 GD+ + ++ + +G +AA A Y+ Sbjct: 285 AGDVQDHVYRQAITSAG--TGCMAALDAQRYL 314 >gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase subunit F [Herbaspirillum seropedicae SmR1] Length = 533 Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 42/289 (14%) Query: 54 GGQCVELYPDKPIYDIPAVPVCTGQELTDNLLKQIEPFDPTFHLGQEVTVVQKRE----- 108 GGQ ++ I + +V G + L + ++ +D ++ VQ+ E Sbjct: 248 GGQVLDTLA---IENFISVQETEGPQFATALEQHVKAYDV------DIMNVQRAEALVPG 298 Query: 109 DGRFDLETSAGTKFITKTIFIAAGVGSFQPRTLKVDGIEAFDGSQLFYRVK-DPAQFEGK 167 D +++ + G KT+ ++ G + R + V G + + + Y D F+GK Sbjct: 299 DKLIEVKLANGGVLKGKTVILSTGA---RWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGK 355 Query: 168 NIVICGGGDSALDWALNFVGKAESVVLLHRREEFRAAPASVAKMKEL-----CEQYEMQL 222 + + GGG+S ++ A++ G V L+ E +A V K+K L + Sbjct: 356 RVSVIGGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLKSLPNVTIVTSAQTTE 415 Query: 223 IVG---QATGFEAKDGKLSEIKVTGADGVTRRLPLDMLLVFFGLSPKLGPIAEW--GLDI 277 I G + G K+ + EIK +PL+ + V GL P EW G Sbjct: 416 ITGDGQRVNGISYKERETGEIK---------HVPLEGVFVQIGLVPN----TEWLKGTLA 462 Query: 278 ERKQLKVVDTEKFETNVPGIFAVGDINTYPGKKKLILSGF-HEAALAAF 325 K ++ K +T++PG+FA GD+ T P K+ +I G AAL+AF Sbjct: 463 LSKHGEIEIDAKGQTSIPGVFAAGDVTTVPYKQIVIAVGAGATAALSAF 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,120,216 Number of extensions: 46434 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 3 Length of query: 360 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 274 Effective length of database: 1,212,660 Effective search space: 332268840 Effective search space used: 332268840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)