BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0022.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protei...   333   5e-93

>gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  333 bits (855), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 181/231 (78%), Positives = 198/231 (85%), Gaps = 2/231 (0%)

Query: 1   VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60
           ++SSA  +LAD++E+LLPQTQC KCGYPACRPYAEAIA+G A YNQCPPGG EGVARLAQ
Sbjct: 6   ITSSA--SLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQ 63

Query: 61  LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120
           LL RP++PLNP +G E+PR  AVIDEA CIGCTLCIQACPVDAI GAAKQMHTV   LCT
Sbjct: 64  LLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCT 123

Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180
           GCDLCVAPCPVDCI+MVEVTPG TGWQAW QEQADAARARH +R+ RLRR+K END RLA
Sbjct: 124 GCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLA 183

Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAAVNDQP 231
           AKAAAKLKEVEAA A TP E+AE  RKKAIIQAA+ERARLKK QA     P
Sbjct: 184 AKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHP 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,740
Number of extensions: 19371
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)