BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0015.p
         (115 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...   114   2e-27

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score =  114 bits (285), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 80/119 (67%), Gaps = 6/119 (5%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           +R LI E+  LLRSQ+A IFGNL+AV+P    + A    A     M+ E AR ++ SLSL
Sbjct: 449 MRDLIAESGRLLRSQSAGIFGNLLAVVPVTAALCALGWFALDRRPMSLEAARQSVASLSL 508

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQRP------DLXWASCSAW 113
           VGP PLYAALTG+LLWL+SL AGFADNWFALRR+RE +++ R        L    C+AW
Sbjct: 509 VGPTPLYAALTGVLLWLASLVAGFADNWFALRRVREVVSNHRRLVHGLGALRAQRCAAW 567


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 378,422
Number of extensions: 14027
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,274,215
Effective search space: 53517030
Effective search space used: 53517030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 124 (52.4 bits)