BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0011.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310939|ref|YP_003775031.1| hypothetical protein Hsero_1610...   673   0.0  

>gi|300310939|ref|YP_003775031.1| hypothetical protein Hsero_1610
           [Herbaspirillum seropedicae SmR1]
          Length = 389

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/389 (83%), Positives = 365/389 (93%)

Query: 1   MLIDFFFTLKDARIPVSIKEFLVLLEAMQKNVISPDIDDFYYLSRITLVKDEANYDKFDK 60
           MLIDFF+T+K A +PVSIKEFL LLEAM K VISP +D+FY+LSR+TLVKDEA++DKFD+
Sbjct: 1   MLIDFFYTVKQAGVPVSIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60

Query: 61  AFGSYFKGIETIFEKNPEIPLDWLMKRMQRELTPEQKAALEKFGYDKLMDRLKELLKEQH 120
           AFG+YFKGIETIFEK PEIPL+WL+K++QR+LTPEQKAA+EKFGYDKLMDRLK+LL+EQ 
Sbjct: 61  AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFGYDKLMDRLKQLLEEQK 120

Query: 121 ERHEGGNKWIGTGGSSPFGNSGYNPEGIRIGGESKNRSAVKVWDERTYKDYDSERELGTR 180
           ERHEGG+KWIGTGG SPFG+ GYNPEGIRIGG+   RSAVKVW+ER Y+DYD ERELGTR
Sbjct: 121 ERHEGGSKWIGTGGVSPFGHGGYNPEGIRIGGKGGQRSAVKVWEERQYQDYDGERELGTR 180

Query: 181 NIKVALRRLRKFARDGAEEELALDDTIRATANNAGYLDIKMQPERRNNIKVMMLFDVGGS 240
           NIKVALRRLR+FAR+G +EELALDDTIRATA+NAGYLDI+MQPER+N IKV+MLFDVGGS
Sbjct: 181 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS 240

Query: 241 MDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYVWKNNRRRHAERFPTWDLLHKYSPDT 300
           MDDHIARTEELFSAA+TEFKNMEFFYFHNCVYDY+WKNNRRRHAERFPTWD+L KY+PDT
Sbjct: 241 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTPDT 300

Query: 301 KLIFVGDATMSPYEIVQPGGSVEYNNPEAGAVWLQRFTSTFANFAWLNPEPEGLWQYRQS 360
           KLIFVGDATMSPYEIVQPGG+VEYNN EAGA WLQRFTSTF +F WLNPEPEGLWQYRQS
Sbjct: 301 KLIFVGDATMSPYEIVQPGGAVEYNNAEAGAEWLQRFTSTFPHFVWLNPEPEGLWQYRQS 360

Query: 361 ISIIQQLMSQRMFPLTIDGLERAMRLLSK 389
           I++I+QLM+ RMFPLT+DGLE AMRLLSK
Sbjct: 361 IALIRQLMNDRMFPLTMDGLEGAMRLLSK 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,228,876
Number of extensions: 50589
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)