BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0008.p (616 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 659 0.0 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 246 5e-66 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 222 8e-59 gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 169 7e-43 gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas... 100 4e-22 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/605 (62%), Positives = 451/605 (74%), Gaps = 13/605 (2%) Query: 1 MNSATLSPKLQELTLDVEGMTCASCVGRVEKALHKVSGVSTVSVNLATEKATLTTTSDVT 60 MN +T + +++LD+EGM+CASCV RVEK L K+ GV+ VSVNLATE+A++ T V Sbjct: 1 MNDSTATRT--DISLDIEGMSCASCVMRVEKVLKKIPGVTEVSVNLATERASIVTAGAVA 58 Query: 61 VDTLIAAIDRAGYAASVPAAAQAAARKSAIAPPWWPVAVGALFTAPLILPMLLMPFGIEW 120 + LIAAI++AGY A +AA WWPVA+ A + PL+LPMLL P G+ W Sbjct: 59 PEQLIAAIEKAGYHARAHLPEEAAPTAKTALSSWWPVALSAALSLPLVLPMLLAPLGVHW 118 Query: 121 QLPGIWQLLLATPVQFWLGARFYRAGWRAVKAYTGNMDLLVALGTSAAYGLSLYQLFNQW 180 LP +WQ LLATPVQFWLG RFY AGW A++A +GNMDLLVALGTSAAYGLSL+Q Sbjct: 119 SLPPLWQWLLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLSLWQWLTLP 178 Query: 181 QAEHHGHAGHGAAHFYFEASAAVITLVLLGKWLETHAKRQTADAIRALDALRPDKATVRR 240 H A H YFE+SA VITLVLLGKWLE AKRQTADAI AL+ALRP+ A VRR Sbjct: 179 TMPGHAMA---MPHLYFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRPENARVRR 235 Query: 241 DGVDSEVALSAIRLGDLIVVRPGERVAVDGVVREGASHLDESMLTGESLPIEKHGGDHVT 300 DG D EV L+ +R+GDL+V+RPGERV VDGVVREG SHLDE+MLTGES P K GD +T Sbjct: 236 DGQDIEVPLAQVRVGDLVVLRPGERVPVDGVVREGRSHLDEAMLTGESRPQAKQAGDPLT 295 Query: 301 GGAINGDGLLLIETSAIGAETVLARIIRMVEHAQAAKAPIQRLVDQVSAVFVPVVLVLAA 360 G+IN +G+L++ET+AIGAETVLARI+RMVE AQAAKAPIQRLVDQVSAVFVP VL+L+ Sbjct: 296 AGSINAEGVLVMETTAIGAETVLARIVRMVEQAQAAKAPIQRLVDQVSAVFVPAVLLLSL 355 Query: 361 LTLLAWGLIAGDWEQALLNAVAVLVIACPCALGLATPTAIMAGTGVAARYGILIKDAEAL 420 LTLL WGL+ G+WEQALLNAVAV+VIACPCALGLATPTAIMAGTGVAAR+GILIKDAEAL Sbjct: 356 LTLLGWGLVQGNWEQALLNAVAVMVIACPCALGLATPTAIMAGTGVAARHGILIKDAEAL 415 Query: 421 EVAHRIGVVAFDKTGTLTEGKPVLAAVHAL-DNDTGKLLALAAALQRNSEHPLAHAVMSA 479 E+AHR+ VAFDKTGTLT G P L + A +LLALAAALQ +SEHPL AV A Sbjct: 416 EIAHRVNAVAFDKTGTLTLGHPRLLELEATPSTQPDELLALAAALQAHSEHPLGRAVREA 475 Query: 480 AAQKHIAPAAADDSKAVPGRGTQALIGNRLSYLGSARWMQELGATPDRHAE-LAGIAKTL 538 AAQ A A+ ++V G G + ++ R LGS+RWMQ+L A HA L A+ L Sbjct: 476 AAQSAQAARQAEQVRSVAGLGIEGVVEGRQLMLGSSRWMQQLQA----HAPALQARAEQL 531 Query: 539 EQQGRTISWLAQTEADGSNVVLLGLLAFGDTLKAGAQPAVTSLHALGVRTVMLSGDNHGA 598 + QGRT+SWLA+ + S V +LGLLAFGD +K GAQ A+ +LH +GVR+ MLSGDN GA Sbjct: 532 QAQGRTLSWLARR--NDSGVEVLGLLAFGDQIKPGAQAAIATLHRMGVRSAMLSGDNLGA 589 Query: 599 AAHVA 603 A VA Sbjct: 590 AQQVA 594 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 246 bits (627), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 209/617 (33%), Positives = 315/617 (51%), Gaps = 59/617 (9%) Query: 3 SATLSPKLQELTLDVEGMTCASCVGRVEKALHKVSGVSTVSVNLATEKATLTTTSDVTVD 62 +A L +E ++ M C + + + L ++SGV T+ NL + T+ ++ Sbjct: 55 AARLEGATEEAVFFIQKMDCPTEEKLIRERLSQMSGVGTLEFNLIQRELTVQHQLP-SIA 113 Query: 63 TLIAAI-----------DRAGYAASVPAAAQAAARKSAIAPPWWPVAVGALFTAPLILPM 111 L+A + D A A QAAA + I W + +G A L + Sbjct: 114 PLVATLKALDMLPAVKSDSLDAEAGRDAPDQAAAYR--IPARRW-ILLGLAGVAALGAEV 170 Query: 112 LLMPFGIEWQLPGIWQLLLATPVQFWLGARFYRAGWRAVKAYTGNMDLLVALGTSAAYGL 171 L G E LP I L LA + LG + GW A++ ++ NM+ L++L A Sbjct: 171 LAWSSGDERSLPVIG-LALAAILLGGLGT--LKKGWIALRNFSLNMNFLMSLAVIGAA-- 225 Query: 172 SLYQLFNQWQAEHHGHAGHGAAHFYFEASAAVITLVLLGKWLETHAKRQTADAIRALDAL 231 + QW +A VI L L + +E + + +AI L A+ Sbjct: 226 ----VIGQW-----------------PEAAVVIVLFTLAEMIEALSLDRARNAIAGLLAM 264 Query: 232 RPDKATVR-RDGVDSEVALSAIRLGDLIVVRPGERVAVDGVVREGASHLDESMLTGESLP 290 PD AT R DGV S V + + D + V PGERV +DG+V G++ ++++ +TGES+P Sbjct: 265 TPDMATRRGEDGVWSTVPARTVTVDDTVRVAPGERVPLDGLVLSGSTSINQAPITGESIP 324 Query: 291 IEKHGGDHVTGGAINGDGLLLIETSAIGAETVLARIIRMVEHAQAAKAPIQRLVDQVSAV 350 ++K GD V G IN G + +A ++ LARI++ V+ AQ +AP QR VD + Sbjct: 325 VQKQAGDPVFAGTINEQGAFEMRVTAAQGDSTLARIVKSVQQAQGQRAPTQRFVDNFARY 384 Query: 351 FVPVVLVLAALTLLAWGLIAGDWEQA-LLNAVAVLVIACPCALGLATPTAIMAGTGVAAR 409 ++P V+V+A L L L+AG Q L A+ +LVIACPCAL ++TP I++G AAR Sbjct: 385 YIPAVVVMAVLVALLPPLLAGAAFQPWLYKALVLLVIACPCALVISTPVTIVSGLASAAR 444 Query: 410 YGILIKDAEALEVAHRIGVVAFDKTGTLTEGKPVLAAVHAL--DNDTGKLLALAAALQRN 467 +GIL+K LE ++ +A DKTGTLT GKP + V +L D LL LA +L Sbjct: 445 HGILVKGGVYLEQGRQLRALALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAAR 504 Query: 468 SEHPLAHAVMSAAAQKHIAPAAADDSKAVPGRGTQALIGNRLSYLGSARWMQELG-ATPD 526 S+HP++ A+ AAQ+ IA + A+ GRG Q I +L +LG+ R + ELG +P+ Sbjct: 505 SDHPVSRAI---AAQEEIATVEVSEFAALAGRGVQGRINGQLLHLGNHRLVHELGQCSPE 561 Query: 527 RHAELAGIAKTLEQQGRTISWLAQTEADGSNVVLLGLLAFGDTLKAGAQPAVTSLHALGV 586 A L + E+QG+T + L DG + L+A DT++ ++ AV L ALGV Sbjct: 562 LEARL----QAFEKQGKTTTVLC---LDGQPQL---LVAVADTVRPSSRQAVAELRALGV 611 Query: 587 RTVMLSGDNHGAAAHVA 603 +ML+GDN A +A Sbjct: 612 EVIMLTGDNSHTAQAIA 628 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 222 bits (565), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 186/605 (30%), Positives = 295/605 (48%), Gaps = 56/605 (9%) Query: 12 ELTLDVEGMTCASCVGRVEKALHKVSGVSTVSVNLATEKATLTTTSDV-TVDTLIAAIDR 70 EL L ++G+ C++CV +EK L ++ G+ +N+AT + L + + T++ + Sbjct: 102 ELVLSIDGLRCSACVWLIEKYLARLPGMQMAEMNVATSRLHLRRDPALCSTATILRGLRG 161 Query: 71 AGYAASV--PAAAQAAARKSA--IAPPWWPVAVGALFTAPLILPMLLMPFGIEWQLPGIW 126 GY A P AR+++ + + + + +P+ + GI+ + + Sbjct: 162 LGYTAYPFDPLRQGEQARRASRRLFRQLFIAGLSMMQVMMYAVPVYMTHEGIDPDMMSLM 221 Query: 127 Q---LLLATPVQFWLGARFYRAGWRAVKAYTGNMDLLVALGTSAAYGLSLYQLFNQWQAE 183 + L L P F+ F+ W ++A MDL VA+G +AA L W+ E Sbjct: 222 RWASLFLTIPAVFYSALPFFTGAWAGLRARAPGMDLPVAIGIAAA---FLASAIATWRGE 278 Query: 184 HHGHAGHGAAHFYFEASAAVITLVLLGKWLETHAKRQTADAIRALDALRPDKATV----- 238 +F++ + I L+L ++LE A+R++A A+ + P A + Sbjct: 279 ---------GEIWFDSVSMFIFLLLGSRYLEAAARRKSASALERMQQAFPASALLAPGYP 329 Query: 239 -RRDGVDSEVALSAIRLGDLIVVRPGERVAVDGVVREGASHLDESMLTGESLPIEKHGGD 297 +R+ + V + +R GD+I+ RPG+ +A D + EGA D ++L+GES P G Sbjct: 330 EQRE--TTLVVAAQLREGDVILARPGDTIAADACLLEGAGEFDLALLSGESRPQSFQIGQ 387 Query: 298 HVTGGAINGDGLLLIETSAIGAETVLARIIRMVEHAQAAKAPIQRLVDQVSAVFVPVVLV 357 GGA+N + + E+ LA + R+ E A K + + D V++ FV +L+ Sbjct: 388 EAPGGAVNLSQPVFLRVVRATGESTLAALTRLAEQAGQGKPALAQWADVVASRFVVALLL 447 Query: 358 LAALTLLAWGLIAGDWEQALLNAVAVLVIACPCALGLATPTAIMAGTGVAARYGILIKDA 417 LA T LAW LI D +A A+AVLV++CPCAL LATP+A+ A T R G LI Sbjct: 448 LAGATFLAWQLI--DPTRAWSTAIAVLVVSCPCALSLATPSALAAATDRLLRAGTLIVRG 505 Query: 418 EALEVAHRIGVVAFDKTGTLTEGKPVLAAVHALDNDTGKLLALAAALQRNSEHPLAHAVM 477 LE R + FDKTGTLT+G+P L A+ + D D + LA+AAA++R S HPLA A++ Sbjct: 506 NVLETLQRADTIVFDKTGTLTQGRPQLTALWS-DVDCQRSLAIAAAMERGSLHPLAKALV 564 Query: 478 SAAAQKHIAPAAADDSKAVPGRGTQALIGNRLSYLGSARWMQELGATPDRHAELAGIAKT 537 A++ + + +V G G Q +I L +GS ++ A LAG A Sbjct: 565 EEGARRQVDALEVEQLTSVTGAGMQGMIEGDLYRIGSRSFV----------AGLAGTALP 614 Query: 538 LEQQGRTISWLAQTEADGSNVVLLG-------LLAFGDTLKAGAQPAVTSLHALGVRTVM 590 L Q+ A G+ V LG D L+ A V + ALG+RT++ Sbjct: 615 --------PVLLQSAASGAGSVYLGSSDGWLARFDLADALRTDAVATVAAFRALGLRTIL 666 Query: 591 LSGDN 595 LSGD Sbjct: 667 LSGDQ 671 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 169 bits (427), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 224/416 (53%), Gaps = 23/416 (5%) Query: 191 GAAHFYFEASAAVITLVLLG-KWLETHAKRQTADAIRALDALRPDKATVRRDGVDSEVAL 249 GA + AAVI L+ G + LE+ A+R+ + AL P A + L Sbjct: 47 GAVLLREDLVAAVIALMFAGGRALESVAQRRAQQEMSALLGKAPHVANRYEGERIVTIGL 106 Query: 250 SAIRLGDLIVVRPGERVAVDGVVREGASHLDESMLTGESLPIEKHGGDHVTGGAIN-GDG 308 + +R GD ++VRPGE V VDG + G + +DESMLTGESLP+ G + G +N G+ Sbjct: 107 NLVRPGDRLLVRPGEPVPVDGRLL-GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNA 165 Query: 309 LLLIETSAIGAETVLARIIRMVEHAQAAKAPIQRLVDQVSAVFVPVVLVLAALTLLAWGL 368 L+ TS + T A+++R+V+ AQA++AP R+ D+ + +F+P+VL +AAL+ W L Sbjct: 166 FDLLATSTDQSST-FAQVLRLVQAAQASQAPAARMADRYALLFIPLVLAMAALS---W-L 220 Query: 369 IAGDWEQALLNAVAVLVIACPCALGLATPTAIMAGTGVAARYGILIKDAEALEVAHRIGV 428 + GD +AL AV+V+A PC L LA P AI+ A+ G+LIK ALE ++ Sbjct: 221 LTGDPRRAL----AVVVVATPCPLILAVPVAIVCAMSRCAQRGVLIKHGGALEKLAQVRT 276 Query: 429 VAFDKTGTLTEGKP-VLAAVHALDNDTGKLLALAAALQRNSEHPLAHAVMSAAAQKHIAP 487 + FDKTGTLT GK ++ V +LL LAA+L++ S H +A AV+SAA ++ + Sbjct: 277 LFFDKTGTLTAGKARLMNMVTTPSIQADELLRLAASLEQMSNHVIAQAVVSAAIERALVL 336 Query: 488 AAADDSKAVPGRGTQALIGNRLSYLGSARWMQELGATPDRHAELAGIAKTLEQQGRTISW 547 + D + PG G + +L +G+ +++ A P +G+ L+ +G Sbjct: 337 SIPDQVQEQPGAGLSGRVDGKLVRVGAMQYVIGPSAAP---PWTSGLRDRLKYEGGAGVC 393 Query: 548 LAQTEADGSNVVLLGLLAFGDTLKAGAQPAVTSLHALGV-RTVMLSGDNHGAAAHV 602 +A DG L G+L D ++ A+ L ALG R VML+GD A + Sbjct: 394 VA---VDGQ---LCGVLYLADDIRLDTPRALRQLRALGAKRIVMLTGDRRDVAMTI 443 >gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbaspirillum seropedicae SmR1] Length = 853 Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 118/441 (26%), Positives = 184/441 (41%), Gaps = 59/441 (13%) Query: 220 QTADAIRALDALRPDKATVRRDGVDSEVALSAIRLGDLIVVRPGERVAVD-GVVREGASH 278 +T A+ AL L A V RDG +A + + GDLI++ G RV D GV+ Sbjct: 88 KTERALAALRVLNSPTARVIRDGRTMRIAAAELVRGDLILLEEGARVPADAGVLEASNLQ 147 Query: 279 LDESMLTGESLPIEKHGGDH-----------------VTGGAINGDGLLLIETSAIGAET 321 LDES+LTGE+ P+EK V G + G + + +A GA T Sbjct: 148 LDESLLTGEACPVEKFAPSTKPEPHALPSGQTDSATLVRSGTLVVRGSGIAKVTATGART 207 Query: 322 VLARIIRMVEHAQAAKAPIQRLVDQVSAVFVPVVLVLAALTLLAWGLIAGDWEQALLNAV 381 L +I ++ +P+QR + ++ V L+L+AL ++ G G W +ALL + Sbjct: 208 ELGKISSLLHELVEEPSPMQRHIARIVTVLAVTGLMLSALLVVLEGYSHGRWTEALLMGI 267 Query: 382 AVLVIACPCALGLATPTAIMAGTGVAARYGILIKDAEALEVAHRIGVVAFDKTGTLTEGK 441 A+ + P L + G AR +L + A+E I V+ DKTGTLTE + Sbjct: 268 ALSMSLLPEELPIILTIFPAIGAWRMARANVLTRRLSAIETLGSISVLCTDKTGTLTENR 327 Query: 442 P-----VLAAVHAL--DNDTG------KLLALAAALQRNSE--HPLA---HAVMSAAAQK 483 ++A H ++D G + L AAL + P+ H + +A++ Sbjct: 328 MRVVQGMIAGRHMYFDESDIGITSPEWRTLLETAALASSPRPTDPMEKAFHQLAGESAKR 387 Query: 484 HIAPAAADDSKAVPGRGTQALIGNRLSYLG--SARWMQELGATPDRHAELAGIAKTLEQQ 541 PA + P T AL + + G A + P+ A L G+ QQ Sbjct: 388 FAPPALTQLLQEYP--FTPALRAMTMVWKGDDDAPLLVATKGAPEAIASLCGLTPAEVQQ 445 Query: 542 GRT-----------------ISWLAQTEADGSNVVL--LGLLAFGDTLKAGAQPAVTSLH 582 + +W A + L LGLLA D L+ G A+ H Sbjct: 446 MQNDIMHLGSHGLRVIAVAACNWSGALPASQAQFGLRYLGLLALADPLRPGVPDAIQRCH 505 Query: 583 ALGVRTVMLSGDNHGAAAHVA 603 +R +M++GD+ A ++A Sbjct: 506 QAEIRVIMITGDHPSTAQNIA 526 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,781,606 Number of extensions: 72722 Number of successful extensions: 365 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 339 Number of HSP's successfully gapped: 7 Length of query: 616 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 525 Effective length of database: 1,188,985 Effective search space: 624217125 Effective search space used: 624217125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)