BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0007.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310936|ref|YP_003775028.1| transcription regulator protein...   211   2e-56
gi|300310934|ref|YP_003775026.1| Pb-specific transcription regul...    62   1e-11

>gi|300310936|ref|YP_003775028.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  211 bits (538), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%)

Query: 7   MNIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGFSM 66
           MNIGEAA ASGVSAKMIRHYE+ GL+P+ +RTDAGYR+YG+RDVHLLRFIRQ R LGFSM
Sbjct: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60

Query: 67  KQIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCHGDSRPDC 126
            Q+ DL+GLWLDQSRPSRKVKQLA  HIAEL+ +I ELQ MK+TL++L   CHGD+RPDC
Sbjct: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120

Query: 127 PILDALG 133
           PIL+ALG
Sbjct: 121 PILEALG 127


>gi|300310934|ref|YP_003775026.1| Pb-specific transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score = 62.4 bits (150), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 6   SMNIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGFS 65
           ++ IGE A  +    + +R+YE   L+P+  R+ A YR+YGER V  L+FIR  R L  +
Sbjct: 3   TLKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLDMT 62

Query: 66  MKQIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCH-GDSRP 124
           + ++ +L+ L     +    V  L + HI  +  +I +LQA+++ L++L   C       
Sbjct: 63  LDEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQPAR 122

Query: 125 DCPILDALGS 134
           DC IL  L S
Sbjct: 123 DCGILQGLAS 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 449,945
Number of extensions: 17093
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)