BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0003.p (354 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 443 e-125 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 184 1e-47 gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 133 2e-32 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 110 2e-25 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust. Identities = 239/341 (70%), Positives = 274/341 (80%), Gaps = 8/341 (2%) Query: 1 VVTQGQPAINQAPITGESMPVAKQINDQVFAGTINGNSAFDYRVTAVQSESTLSRIVRSV 60 +V G +INQAPITGES+PV KQ D VFAGTIN AF+ RVTA Q +STL+RIV+SV Sbjct: 305 LVLSGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFEMRVTAAQGDSTLARIVKSV 364 Query: 61 QQAQGQRAPTQRFVDQFARYYIPSVVAVAALIAIVPPLLLGAAFYPWLYKALVLLVIACP 120 QQAQGQRAPTQRFVD FARYYIP+VV +A L+A++PPLL GAAF PWLYKALVLLVIACP Sbjct: 365 QQAQGQRAPTQRFVDNFARYYIPAVVVMAVLVALLPPLLAGAAFQPWLYKALVLLVIACP 424 Query: 121 CALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRLIKALALDKTGTITHGKPVVTD-VQ 179 CALVISTPVTIVSGLA+AARHGIL+KGGVYLEQGR ++ALALDKTGT+T GKP VTD V Sbjct: 425 CALVISTPVTIVSGLASAARHGILVKGGVYLEQGRQLRALALDKTGTLTFGKPRVTDVVS 484 Query: 180 LLSDGDQALLLQQAASLALRSDHPVSAAIAAHWTQQQNQQQRRADEVADFEALSGRGVKG 239 L + DQ LLQ A SLA RSDHPVS AIAA Q++ EV++F AL+GRGV+G Sbjct: 485 LQAQADQQALLQLAVSLAARSDHPVSRAIAA-------QEEIATVEVSEFAALAGRGVQG 537 Query: 240 RIAGSEFHLGNHRLVHEMGMCSPQLEARLQLLERQGKTTTILCRDGRVQLLLAVADTVRD 299 RI G HLGNHRLVHE+G CSP+LEARLQ E+QGKTTT+LC DG+ QLL+AVADTVR Sbjct: 538 RINGQLLHLGNHRLVHELGQCSPELEARLQAFEKQGKTTTVLCLDGQPQLLVAVADTVRP 597 Query: 300 SSRDAIAQLKQLGVSVTMLTGDNPHTARAIGDIVQLDDARN 340 SSR A+A+L+ LGV V MLTGDN HTA+AI + DAR Sbjct: 598 SSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGISDARG 638 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 199/343 (58%), Gaps = 9/343 (2%) Query: 1 VVTQGQPAINQAPITGESMPVAKQINDQVFAGTINGNSAFDYRVTAVQSESTLSRIVRSV 60 VV +G+ +++A +TGES P AKQ D + AG+IN TA+ +E+ L+RIVR V Sbjct: 266 VVREGRSHLDEAMLTGESRPQAKQAGDPLTAGSINAEGVLVMETTAIGAETVLARIVRMV 325 Query: 61 QQAQGQRAPTQRFVDQFARYYIPSVVAVAALIAIVPPLLLGAAFYPWLYKALVLLVIACP 120 +QAQ +AP QR VDQ + ++P+V+ ++ L + L+ G + L A+ ++VIACP Sbjct: 326 EQAQAAKAPIQRLVDQVSAVFVPAVLLLSLLTLLGWGLVQGN-WEQALLNAVAVMVIACP 384 Query: 121 CALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRLIKALALDKTGTITHGKPVVTDVQL 180 CAL ++TP I++G AARHGILIK LE + A+A DKTGT+T G P + +++ Sbjct: 385 CALGLATPTAIMAGTGVAARHGILIKDAEALEIAHRVNAVAFDKTGTLTLGHPRLLELEA 444 Query: 181 LSDGDQALLLQQAASLALRSDHPVSAAIAAHWTQQQNQQQRRADEVADFEALSGRGVKGR 240 LL AA+L S+HP+ A+ + Q + A + +++G G++G Sbjct: 445 TPSTQPDELLALAAALQAHSEHPLGRAV----REAAAQSAQAARQAEQVRSVAGLGIEGV 500 Query: 241 IAGSEFHLGNHRLVHEMGMCSPQLEARLQLLERQGKTTTILCR--DGRVQL--LLAVADT 296 + G + LG+ R + ++ +P L+AR + L+ QG+T + L R D V++ LLA D Sbjct: 501 VEGRQLMLGSSRWMQQLQAHAPALQARAEQLQAQGRTLSWLARRNDSGVEVLGLLAFGDQ 560 Query: 297 VRDSSRDAIAQLKQLGVSVTMLTGDNPHTARAIGDIVQLDDAR 339 ++ ++ AIA L ++GV ML+GDN A+ + + + + R Sbjct: 561 IKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQVASELGIQEVR 603 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/347 (30%), Positives = 171/347 (49%), Gaps = 40/347 (11%) Query: 5 GQPAINQAPITGESMPVAKQINDQVFAGTINGNSAFDYRVTAVQSESTLSRIVRSVQQAQ 64 G ++++ +TGES+PV+ + +G +N +AFD T+ ST ++++R VQ AQ Sbjct: 131 GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNAFDLLATSTDQSSTFAQVLRLVQAAQ 190 Query: 65 GQRAPTQRFVDQFARYYIPSVVAVAALIAIVPPLLLGAAFYPWLY-----KALVLLVIAC 119 +AP R D++A +IP V+A+AAL WL +AL ++V+A Sbjct: 191 ASQAPAARMADRYALLFIPLVLAMAAL--------------SWLLTGDPRRALAVVVVAT 236 Query: 120 PCALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRLIKALALDKTGTITHGKPVVTDVQ 179 PC L+++ PV IV ++ A+ G+LIK G LE+ ++ L DKTGT+T GK + ++ Sbjct: 237 PCPLILAVPVAIVCAMSRCAQRGVLIKHGGALEKLAQVRTLFFDKTGTLTAGKARLMNMV 296 Query: 180 LLSDGDQALLLQQAASLALRSDHPVSAAIAAHWTQQ--------QNQQQRRADEVADFEA 231 LL+ AASL S+H ++ A+ + ++ Q Q+Q Sbjct: 297 TTPSIQADELLRLAASLEQMSNHVIAQAVVSAAIERALVLSIPDQVQEQ----------- 345 Query: 232 LSGRGVKGRIAGSEFHLGNHRLVHEMGMCSPQLEARLQLLERQGKTTTILCRDGRVQLLL 291 G G+ GR+ G +G + V P L+ +G + DG++ +L Sbjct: 346 -PGAGLSGRVDGKLVRVGAMQYVIGPSAAPPWTSGLRDRLKYEGGAGVCVAVDGQLCGVL 404 Query: 292 AVADTVRDSSRDAIAQLKQLGVS-VTMLTGDNPHTARAIGDIVQLDD 337 +AD +R + A+ QL+ LG + MLTGD A IG + DD Sbjct: 405 YLADDIRLDTPRALRQLRALGAKRIVMLTGDRRDVAMTIGSSLGFDD 451 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 27/328 (8%) Query: 4 QGQPAINQAPITGESMPVAKQINDQVFAGTINGNSAFDYRVTAVQSESTLSRIVRSVQQA 63 +G + A ++GES P + QI + G +N + RV ESTL+ + R +QA Sbjct: 364 EGAGEFDLALLSGESRPQSFQIGQEAPGGAVNLSQPVFLRVVRATGESTLAALTRLAEQA 423 Query: 64 QGQRAPTQRFVDQFARYYIPSVVAVAALIAIVPPLLLGAAFYPW--------LYKALVLL 115 GQ P + Q+A VVA ++A++ LL GA F W A+ +L Sbjct: 424 -GQGKPA---LAQWA-----DVVASRFVVALL--LLAGATFLAWQLIDPTRAWSTAIAVL 472 Query: 116 VIACPCALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRLIKALALDKTGTITHGKPVV 175 V++CPCAL ++TP + + R G LI G LE + + DKTGT+T G+P + Sbjct: 473 VVSCPCALSLATPSALAAATDRLLRAGTLIVRGNVLETLQRADTIVFDKTGTLTQGRPQL 532 Query: 176 TDVQLLSDGDQALLLQQAASLALRSDHPVSAAIAAHWTQQQNQQQRRADEVADFEALSGR 235 T L SD D L AA++ S HP++ A+ ++ ++Q A EV +++G Sbjct: 533 T--ALWSDVDCQRSLAIAAAMERGSLHPLAKAL----VEEGARRQVDALEVEQLTSVTGA 586 Query: 236 GVKGRIAGSEFHLGNHRLVHEMGMCSPQLEARLQLLERQGKTTTILCRDGRVQLLLAVAD 295 G++G I G + +G+ V G+ L L G + L +AD Sbjct: 587 GMQGMIEGDLYRIGSRSFVA--GLAGTALPPVLLQSAASGAGSVYLGSSDGWLARFDLAD 644 Query: 296 TVRDSSRDAIAQLKQLGVSVTMLTGDNP 323 +R + +A + LG+ +L+GD P Sbjct: 645 ALRTDAVATVAAFRALGLRTILLSGDQP 672 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 840,349 Number of extensions: 27664 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 5 Length of query: 354 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 268 Effective length of database: 1,212,660 Effective search space: 324992880 Effective search space used: 324992880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)