BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0001.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine...   108   4e-25

>gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  108 bits (270), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 63/80 (78%)

Query: 12  SGAWKTRRGFDSLVQMSSGIAEAGMRRLGRDKPTPLPVQALDHATGYLMATAAIRGLTQR 71
           SGAW+ RRGFDSL+QMS+GIAEAGMR +G   P  LPVQA+DHATGYLMA AA+RGLT R
Sbjct: 320 SGAWQCRRGFDSLIQMSTGIAEAGMRVMGSAAPVNLPVQAIDHATGYLMAAAALRGLTLR 379

Query: 72  LKTGKGSEVLTSLARMAQLL 91
           +  G G EV  SLAR A +L
Sbjct: 380 MTRGVGIEVRASLARTAAVL 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 446,330
Number of extensions: 15425
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)