BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0029.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312905|ref|YP_003776997.1| glutamate synthase [Herbaspiril...   469   e-133
gi|300313212|ref|YP_003777304.1| glutamate synthase large subuni...    97   2e-21

>gi|300312905|ref|YP_003776997.1| glutamate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 531

 Score =  469 bits (1206), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/248 (90%), Positives = 240/248 (96%)

Query: 1   MSVFNVSAMSFGSLSSNAIRALNQGAKKGNFAHDTGEGSISTYHREFGGDLVWQIASGYF 60
           MSVFNVSAMSFGSLS+NAIRALNQGAKKGNFAHDTGEGS+S YHREFGGDLVWQIASGYF
Sbjct: 152 MSVFNVSAMSFGSLSANAIRALNQGAKKGNFAHDTGEGSVSEYHREFGGDLVWQIASGYF 211

Query: 61  GCRHPDGSFDEEKFAVQANAPQVKMIEVKLSQGAKPGHGGVLPAAKITPEISATRGIPMG 120
           GCR+ DGSF++EKF  QA +PQ+KMIEVKLSQGAKPGHGGVLPAAKITPEI+ATRGIPMG
Sbjct: 212 GCRNADGSFNDEKFTAQAQSPQIKMIEVKLSQGAKPGHGGVLPAAKITPEIAATRGIPMG 271

Query: 121 VDCISPAVHSSFSSPIGLLQFIEKLRTLSGGKPTGIKLCVGHPWEFFGIAKAMLETNIVP 180
           VDCISPAVHSSFS+PIGLL+FIEKLR LSGGKP GIKLCVGHPWEFFGIAKAML+T+IVP
Sbjct: 272 VDCISPAVHSSFSTPIGLLEFIEKLRGLSGGKPVGIKLCVGHPWEFFGIAKAMLKTDIVP 331

Query: 181 DFITVDGAEGGTGAAPLEFTDHVGMPLQEGLLMVHNTLVGIGMRDRVKIGASGKIITAFD 240
           DFITVDG+EGGTGAAPLEF DHVGMPLQEGL+MVHNTLVGIG+RD+VKIGASGKIITAFD
Sbjct: 332 DFITVDGSEGGTGAAPLEFVDHVGMPLQEGLVMVHNTLVGIGLRDKVKIGASGKIITAFD 391

Query: 241 VARTLALG 248
           VARTLALG
Sbjct: 392 VARTLALG 399


>gi|300313212|ref|YP_003777304.1| glutamate synthase large subunit
            oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 1558

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 54/280 (19%)

Query: 4    FNVSAMSFGSLSSNAIRALNQGAKKGNFAHDTGEG--SISTYHREFGG------------ 49
            F   AMS GS+S+ A   L     +     +TGEG   ++ Y  E  G            
Sbjct: 880  FATGAMSLGSISTEAHATLAIAMNRIGGKSNTGEGGEDVNRYRNELKGIPIKQGATLASE 939

Query: 50   --------DL-----------VWQIASGYFGCRHPDGSFDEEKFAVQANAPQVKMIEVKL 90
                    D+           + Q+ASG FG           ++ + A+      I++K+
Sbjct: 940  IGKEHIEVDIPLLEGDSLRSRIKQVASGRFGV--------SAEYLISAD-----QIQIKM 986

Query: 91   SQGAKPGHGGVLPAAKITPEISATRGIPMGVDCISPAVHSSFSSPIGLLQFIEKLRTLSG 150
            +QGAKPG GG LP  K++  I+  R    GV  ISP  H    S   L Q I  L+ ++ 
Sbjct: 987  AQGAKPGEGGQLPGHKVSEYIAKLRVSVPGVGLISPPPHHDIYSIEDLAQLIHDLKNVNP 1046

Query: 151  GKPTGIKLC--VGHPWEFFGIAKAMLETNIVPDFITVDGAEGGTGAAPLEFTDHVGMPLQ 208
                 +KL   VG      G+AKA        D + + G +GGTGA+PL    H G P +
Sbjct: 1047 RASISVKLVSEVGVGTVAAGVAKAK------SDHVVIAGHDGGTGASPLSSIKHAGSPWE 1100

Query: 209  EGLLMVHNTLVGIGMRDRVKIGASGKIITAFDVARTLALG 248
             GL     TLV  G+R+R+++ A G++ T  DV     LG
Sbjct: 1101 LGLAETQQTLVLNGLRNRIRVQADGQMKTGRDVVIGAMLG 1140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 880,769
Number of extensions: 39505
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)