BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0021.p (691 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312898|ref|YP_003776990.1| translation initiation factor I... 679 0.0 gi|300311258|ref|YP_003775350.1| GTP-binding elongation factor p... 67 5e-12 gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor p... 61 2e-10 gi|300309454|ref|YP_003773546.1| GTPase translation elongation f... 59 1e-09 gi|300309440|ref|YP_003773532.1| EF-Tu elongation factor protein... 59 1e-09 >gi|300312898|ref|YP_003776990.1| translation initiation factor IF-2 [Herbaspirillum seropedicae SmR1] Length = 954 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/402 (90%), Positives = 371/402 (92%), Gaps = 4/402 (0%) Query: 248 VEDEVAQIKAMMNAPRRVIKAPEPAPVAATKTSEGTLHKPADK-KPGEKKDDKKAPVAVD 306 VEDEVAQIKAMMNAPRRVIKAPEPA AA KTSEGTLHKPA KPGEKKDDKK VA D Sbjct: 246 VEDEVAQIKAMMNAPRRVIKAPEPA-PAAAKTSEGTLHKPATAAKPGEKKDDKKPAVAAD 304 Query: 307 KKSIKSANVSSTWQDDAKKRGTG-MKTRGNTGTGGRDGWRAGPKGRRNSHHDDH-ESNFQ 364 KKSIKSANVSSTWQDDAKKRGTG MK+RG TG GGRDGWRAGPKGRR+SH DD ESNFQ Sbjct: 305 KKSIKSANVSSTWQDDAKKRGTGGMKSRGATGGGGRDGWRAGPKGRRHSHGDDQRESNFQ 364 Query: 365 APTEAIVKDVHVPETITVAEIAHKMSVKASEVIKHLMKLGQMVTINQVLDQETAMIVVEE 424 PTEA+V DV+VPETITVAE+AHKM+VKASEVIKHLMKLGQMVTINQVLDQETAMIVVEE Sbjct: 365 VPTEAVVHDVYVPETITVAEVAHKMAVKASEVIKHLMKLGQMVTINQVLDQETAMIVVEE 424 Query: 425 MGHRAHAAKQDDPEALLEEGVEHPDAELLARAPVVTVMGHVDHGKTSLLDYIRRAKVASG 484 MGHRAHAAK DDPEALL EG EH DAE L RAPVVTVMGHVDHGKTSLLDYIRR KVASG Sbjct: 425 MGHRAHAAKLDDPEALLVEGEEHGDAEALPRAPVVTVMGHVDHGKTSLLDYIRRTKVASG 484 Query: 485 EAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQT 544 EAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQT Sbjct: 485 EAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQT 544 Query: 545 KEAIAHAKAGGVPLVVAINKIDKQGANLDRVKQELIAEGVVPEEYGGEAPFISVSAKTGE 604 KEAIAHAKAGGVPLVVAINKIDK GAN DRVKQELIAE VVPEEYGG+APFI VSAKTGE Sbjct: 545 KEAIAHAKAGGVPLVVAINKIDKPGANPDRVKQELIAEEVVPEEYGGDAPFIPVSAKTGE 604 Query: 605 GIDSLLENVLLQAEVLELKAAINVPAKGLVIEAKLDKGRGPC 646 GIDSLLENVLLQAEVLELKA + VPA+GLVIEAKLDKGRGP Sbjct: 605 GIDSLLENVLLQAEVLELKAPVEVPARGLVIEAKLDKGRGPV 646 >gi|300311258|ref|YP_003775350.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 39/212 (18%) Query: 459 VTVMGHVDHGKTSLLDYIRRAKVASGEAGGIT------QHIGAYHVETPRGM-------- 504 +++ H+DHGK++L D I + GG++ Q + + +E RG+ Sbjct: 7 FSIIAHIDHGKSTLADRIIQL------CGGLSNREMEAQVLDSMDIERERGITIKAQTAA 60 Query: 505 ------------ITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAK 552 + +DTPGH F+ +R A + +LVV A GV QT A Sbjct: 61 LSYKAKDGQIYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAL 120 Query: 553 AGGVPLVVAINKIDKQGANLDRVKQELIAEGVVPEEYGGEAPFISVSAKTGEGIDSLLEN 612 GV +V +NKID A+ D K E+ E V+ + P SAKTG G++ +LE Sbjct: 121 DLGVEVVPVLNKIDLPSADPDNAKSEI--EDVIGIDASDATP---CSAKTGLGVEDVLEA 175 Query: 613 VLLQAEVLELKAAINVPAKGLVIEAKLDKGRG 644 ++ A+V K P + L+I++ D G Sbjct: 176 IV--AKVPAPKGDPEAPLQALIIDSWFDNYVG 205 >gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 627 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 16/123 (13%) Query: 464 HVDHGKTSLLDYIRRAKVASGEAGGITQHI-GAYHVETPRGM---------------ITF 507 HVDHGKT+L+D + R + + + + +E RG+ I Sbjct: 30 HVDHGKTTLVDQLLRQSGTFRDNQQVDNRVMDSNDIEKERGITILSKNCAVEYKGTHINI 89 Query: 508 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVPLVVAINKIDK 567 +DTPGH F R D V+L+V A +G MPQT+ A A G+ +V +NKID+ Sbjct: 90 VDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVLNKIDR 149 Query: 568 QGA 570 GA Sbjct: 150 PGA 152 >gi|300309454|ref|YP_003773546.1| GTPase translation elongation factor TU [Herbaspirillum seropedicae SmR1] Length = 396 Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 17/125 (13%) Query: 459 VTVMGHVDHGKTSLLDYIRR--AKVASGEAG--------------GITQHIGAYHVETPR 502 V +GHVDHGKT+L I +K GEA GIT + ET Sbjct: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARGITINTAHVEYETAN 74 Query: 503 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVP-LVVA 561 +D PGH + GA D ILV +A DG MPQT+E I ++ GVP ++V Sbjct: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIIVF 134 Query: 562 INKID 566 +NK D Sbjct: 135 LNKAD 139 >gi|300309440|ref|YP_003773532.1| EF-Tu elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 396 Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 17/125 (13%) Query: 459 VTVMGHVDHGKTSLLDYIRR--AKVASGEAG--------------GITQHIGAYHVETPR 502 V +GHVDHGKT+L I +K GEA GIT + ET Sbjct: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARGITINTAHVEYETAN 74 Query: 503 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVP-LVVA 561 +D PGH + GA D ILV +A DG MPQT+E I ++ GVP ++V Sbjct: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIIVF 134 Query: 562 INKID 566 +NK D Sbjct: 135 LNKAD 139 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.126 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,589,581 Number of extensions: 60908 Number of successful extensions: 270 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 256 Number of HSP's successfully gapped: 6 Length of query: 691 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 599 Effective length of database: 1,184,250 Effective search space: 709365750 Effective search space used: 709365750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 134 (56.2 bits)