BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0013.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine ...   288   2e-79
gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...    61   5e-11

>gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  288 bits (737), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/161 (87%), Positives = 151/161 (93%)

Query: 1   MTIGTYESDLNGDGLRIGIVQARFNEDVCHGLLASCLAELKHLGVQDEDILHVSVPGALE 60
           MTIGTY+ D NG+ LRIGIVQARFNEDVCHGLLA+CLAELKHLGV DEDILHV+VPGALE
Sbjct: 1   MTIGTYDPDFNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE 60

Query: 61  IPLALQKMAETDQFDALIALGAVIRGETYHFELVSNESGAGITRVGLDAGIPIANAVLTT 120
           IPLALQKMAET+QFDALIALGAVIRGETYHFELVSNESGAGITR+GLD G+PIANAVLTT
Sbjct: 61  IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLTT 120

Query: 121 ENDEQAEARMAVKGADAARVAVEMANLSLALDELAQVAEEE 161
           ENDEQAE RMA KGADAARVAVEMANL++ L+EL QV EEE
Sbjct: 121 ENDEQAEVRMAEKGADAARVAVEMANLAIVLEELGQVTEEE 161


>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%)

Query: 14  GLRIGIVQARFNEDVCHGLLASCLAELKHLGVQDEDILHVSVPGALEIPLALQKMAETDQ 73
           G RI  +QA +++D+      +   E+  LG     I    +PGA EIPL  + +A+T +
Sbjct: 14  GQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFEIPLHAKVLAKTGR 73

Query: 74  FDALIALGAVIRGETYHFELVSNESGAGITRVGLDAGIPIANAVLT 119
           +  ++A G V+ G  Y  + V+    + + +V LD  +P+ +AVLT
Sbjct: 74  YAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLT 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 478,942
Number of extensions: 20022
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)