BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0012.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312879|ref|YP_003776971.1| transcription antiterminator (L...   265   9e-73

>gi|300312879|ref|YP_003776971.1| transcription antiterminator (L
           factor) transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 156

 Score =  265 bits (678), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 1   MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60
           M+NK QHAN +KNRTPRHRAREFALQGLYQWLLN+EDAGAIEAHIREAHGFDKADAEHFD
Sbjct: 1   MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60

Query: 61  VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120
            LL GAI+ A +LR  LAPLIDR I ELSPVEHAALLIGA+EL+N++EIPY+VVINEAVE
Sbjct: 61  TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120

Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEV-SAGRR 155
           LTKSFGGIDGHKYVNGVLDRFAA+ R  EV +AGRR
Sbjct: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 500,342
Number of extensions: 20026
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)