BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0011.p (412 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic ami... 647 0.0 gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent a... 147 2e-36 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 137 1e-33 gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Her... 119 5e-28 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 79 9e-16 >gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 393 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/392 (82%), Positives = 353/392 (90%) Query: 21 MSFHDLASRLQNIAPFHVMELAKMAAALEQQGHHIIHMGIGEPDFTAAPAVVAAATQAMA 80 M+ + LA+RLQ+IAPFHVMEL+K AA LEQQG H+IHMGIGEPDFTA PAVV AAT+AM Sbjct: 1 MNLNQLAARLQHIAPFHVMELSKKAAVLEQQGRHLIHMGIGEPDFTAPPAVVEAATRAMT 60 Query: 81 DGKMQYTSATGLPALREAISAHYRRVYGLDIAPSRIIVTAGASAALLLACAALVEKGAEV 140 +GKMQYTSATGLP LR AIS HYR VYGL+IAP RI+VTAGASAALLLACAALVE+ +EV Sbjct: 61 EGKMQYTSATGLPQLRAAISDHYRSVYGLEIAPERIVVTAGASAALLLACAALVERDSEV 120 Query: 141 LMPDPSYPCNRHFVAAFEGSAKLIESGPEHRFQLSAGMVQEHWSPATKGVLLASPSNPTG 200 LMPDPSYPCNRHFVAAFEG AKLI SGPEHRFQLSA MV+EHW AT+GVLLASPSNPTG Sbjct: 121 LMPDPSYPCNRHFVAAFEGRAKLIASGPEHRFQLSAQMVREHWGSATRGVLLASPSNPTG 180 Query: 201 TSILPDELKKIVDVVREKNGFTIVDEIYQGLSYEGAPFSALSLGEDVIVINSFSKYFNMT 260 TSILPDEL+ IV VR++ GFTIVDEIYQGLSYEGAPFSALSLG+DV+VINSFSKYFNMT Sbjct: 181 TSILPDELRAIVGEVRQRGGFTIVDEIYQGLSYEGAPFSALSLGDDVVVINSFSKYFNMT 240 Query: 261 GWRLGWLVLPESLVPQVEKLAQNLFICASSIAQHAGIACFAPESIALYEERKAEFKRRRD 320 GWRLGWLVLP +LVPQVEKLAQNL ICASSIAQHA +ACF P+++ALYEERKAEFKRRRD Sbjct: 241 GWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPQTLALYEERKAEFKRRRD 300 Query: 321 YIVPQLERLGFTVPVMPDGAFYVYADCSALSDDADAFTIDMLNKAGVVLVPGLDFGPATA 380 YIVP LE LGFTVPVMPDGAFYVYADCSAL+DDAD ++DMLN+AGVVLVPGLDFGP TA Sbjct: 301 YIVPALESLGFTVPVMPDGAFYVYADCSALADDADQLSLDMLNEAGVVLVPGLDFGPFTA 360 Query: 381 HRYIRLSYATSMENLQEAVRRLEKYLAERKAA 412 RYIRLSYATSMENLQEAV RL + +R+ A Sbjct: 361 RRYIRLSYATSMENLQEAVARLRVFFEKRRKA 392 >gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 385 Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 192/375 (51%), Gaps = 25/375 (6%) Query: 44 MAAALEQQGHHIIHMGIGEPDFTAAPAVVAAATQAMADGKMQYTSATGLPALREAISAHY 103 M+A ++G +++G G PDF PA+VAA TQAM +G QY G+P LREAI+ Sbjct: 21 MSALASEKG--AVNLGQGFPDFHCDPALVAAVTQAMQEGLNQYPPMAGVPVLREAIAEKV 78 Query: 104 RRVYGLDIAP-SRIIVTAGASAALLLACAALVEKGAEVLMPDPSYPCNRHFVAAFEGSAK 162 ++YG P S I VTAGA+ +L + V G EV++ +P Y C +V A E + Sbjct: 79 EKLYGHRYDPVSEITVTAGATQGILTSVLCAVHPGDEVIVIEPVYDC---YVPAIELAGG 135 Query: 163 L-----IESGPEHRFQLSAGMVQEHWSPATKGVLLASPSNPTGTSILPDELKKIVDVVRE 217 + +E G + + + V+ +P T+ +++ +P NPTG+ + ++ + D+VR Sbjct: 136 VPVFVQMEVGAQG-YSIPWDKVKAAVTPKTRMIMVNTPHNPTGSVMRAADVAALADIVRG 194 Query: 218 KNGFTIVDEIYQGLSYEGAPFSALS----LGEDVIVINSFSKYFNMTGWRLGWLVLPESL 273 + + DE+Y+ + Y+G P +L+ L E + +SF K +++TGW++G++ P +L Sbjct: 195 TDILILSDEVYEHMVYDGQPHESLARHPELAERSFINSSFGKTYHVTGWKVGYVAAPAAL 254 Query: 274 VPQVEKLAQ-NLFICASSIAQHAGIACFAPESIALYEERKAEFKRRRDYIVPQLERLGFT 332 + K+ Q N+F + + G+A + + A Y + A ++ +RD L F Sbjct: 255 TAEFRKVHQFNVFTVNTPV--QYGLAAYMKDP-APYLDLPAFYQHKRDLFRTGLANTRFE 311 Query: 333 VPVMP-DGAFYVYADCSALSDDADA-FTIDMLNKAGVVLVPGLDF-GPATAHRYIRLSYA 389 ++P G ++ A+S +A F + ++ GV +P F +R +A Sbjct: 312 --LLPSQGTYFQCVKYGAISALPEAEFCKWLTSEIGVAAIPVSAFYNTPRESGIVRFCFA 369 Query: 390 TSMENLQEAVRRLEK 404 E LQ A+ RL K Sbjct: 370 KKDETLQLALERLAK 384 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/403 (27%), Positives = 190/403 (47%), Gaps = 19/403 (4%) Query: 20 PMSFHDLASRLQNIAPFHVMELAKMAAALEQQGHHIIHMGIGEPDFTAAPAVVAAATQ-A 78 P+SF R++ + P+ A++ A ++G II M +G PD P +V + A Sbjct: 38 PVSF----PRIERLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVA 93 Query: 79 MADGKMQYTSATGLPALREAISAHYRRVYGLDIAP-SRIIVTAGASAALLLACAALVEKG 137 Y+S+ G+P LR AI+ YR Y +D P S IVT G+ L A ++KG Sbjct: 94 QRPDTHGYSSSKGIPRLRRAIAHWYRSRYEVDFDPDSEAIVTIGSKEGLAHLMLATLDKG 153 Query: 138 AEVLMPDPSYPCNRHFVAAFEGSAKLIESGPEHRF--QLSAGMVQEHWSPATKGVLLASP 195 VL+P+PSYP + + + + + P F +L + + + P K ++L P Sbjct: 154 DTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAVRESY--PKPKMMILGFP 211 Query: 196 SNPTGTSILPDELKKIVDVVREKNGFTIVDEIYQGLSYEG--APFSALSLGEDVIVINSF 253 SNPT + + +++V + RE + D Y ++++G AP G + + F Sbjct: 212 SNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAREVAVEFF 271 Query: 254 --SKYFNMTGWRLGWLVLPESLVPQVEKLAQNLFICASSIAQHAGIACFAPESIALYEER 311 SK +NM GWR+G++V LV + ++ + + Q A IA + + EE Sbjct: 272 TLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQ-SCVEEI 330 Query: 312 KAEFKRRRDYIVPQLERLGFTVPVMPDGAFYVYADCSALSDDADA--FTIDMLNKAGVVL 369 +A ++RRR+ +V L G+ V V P + Y++A + F +L +A V + Sbjct: 331 RANYERRRNVLVKGLHEAGWMVDV-PKASMYIWARIPEPYRQFGSLEFARILLEQAKVCV 389 Query: 370 VPGLDFGPATAHRYIRLSYATSMENLQEAVRRLEKYLAERKAA 412 PG+ FG Y+R + + +++A+R ++ K + Sbjct: 390 SPGIGFG-EYGDEYVRFALIENESRIRQAIRGIKAMFKNAKGS 431 >gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 409 Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 185/382 (48%), Gaps = 27/382 (7%) Query: 45 AAALEQQGHHIIHMGIGEP---DFTAAPAVVAAATQAMADGKMQYTSATGLPALREAISA 101 A +E++GH II + IG F A +V + M + YT + GL A R+++ Sbjct: 25 ARQMEEEGHKIIKLNIGNLAAFGFDAPDEIVQDMIRNMGNAS-GYTDSKGLFAPRKSV-M 82 Query: 102 HY---RRVYGLDIAPSRIIVTAGASAALLLACAALVEKGAEVLMPDPSYPCNRHFVAAFE 158 HY +++ G+ I I + GAS ++++ AL+ G EVL+P P YP V+ Sbjct: 83 HYTQQKKIEGVTI--DDIYLGNGASELIVMSVNALLNTGDEVLVPSPDYPLWTAAVSLSG 140 Query: 159 GSAKLIESGPEHRFQLSAGMVQEHWSPATKGVLLASPSNPTGTSILPDELKKIVDVVREK 218 G+ + +Q +++ +P TK +++ +P+NPTG + LK+I+++ R+ Sbjct: 141 GTPVHYVCDEQQGWQPDIADIKKKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQH 200 Query: 219 NGFTIVDEIYQGLSYEGAPFSAL-SLGEDVIVI--NSFSKYFNMTGWRLGWLVLP----- 270 + DEIY + Y+G ++L SL +DV+ I N SK + G+R GW+V+ Sbjct: 201 QLIILADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSKNYRSCGYRAGWMVVSGEKKH 260 Query: 271 -ESLVPQVEKLAQNLFICASSIAQHA-GIACFAPESIALYEERKAEFKRRRDYIVPQLER 328 + + LA ++ +CA++ Q A A +SI + ++RD L Sbjct: 261 ARDYIEGLNMLA-SMRLCANAPGQFAIQTALGGYQSINDLVGPQGRLTKQRDLAHQLLTD 319 Query: 329 LGFTVPVMPDGAFYVY----ADCSALSDDADAFTIDMLNKAGVVLVPGLDFGPATAHRYI 384 + V P A Y++ + + DD + F ++L + V++V G F T + Sbjct: 320 IPGVSCVKPKSALYMFPRLDPEIYPIKDDQE-FAYELLAEEKVLIVQGTGFNCPTPDHF- 377 Query: 385 RLSYATSMENLQEAVRRLEKYL 406 R+ + + ++L E++ R+ +L Sbjct: 378 RVVFLPNTDDLTESMGRIAHFL 399 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 149/352 (42%), Gaps = 43/352 (12%) Query: 81 DGKM--QYTSATGLPALREAISAHYRRVYGLDIAPSRIIVTAGASAALLLACAALVEKGA 138 GKM QY G LRE I+A G I+ ++++ +G+ L L L+++G+ Sbjct: 66 QGKMALQYGPTDGYLPLREWIAASLS-TNGAQISAEQVLMVSGSQQGLDLLGKVLIDEGS 124 Query: 139 EVLMPDPSYPCNRHFVAAFEGSAKLIESGPEHRFQLSAGMVQEHWSPATKGVLLASPSNP 198 +VL+ PSY + AF ES P F L ++ A L + NP Sbjct: 125 KVLVETPSY---LGALQAFALYGAKFESVPSDEFGLQPETIEAIAGGARMLYSLPNFQNP 181 Query: 199 TGTSILPDELKKIVDVVREKNGFTIVDEIYQGLSYEGAPF-SALSLG-EDVIVINSFSKY 256 TG ++ + K+V+ I D+ Y LSY+ AP LS+ VI + SFSK Sbjct: 182 TGRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSGVIYMGSFSKV 241 Query: 257 FNMTGWRLGWLVLPESLVPQVEKLAQNLFICASSIAQHAGIACFAPESIALYEERKAEFK 316 G RLG++V P L+ ++E+ Q + + + Q + +YE K F Sbjct: 242 LT-PGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQ-----------MVVYEAIKDGF- 288 Query: 317 RRRDYIVPQLERL-GFTVPVM----------------PDGAFYVYADCSALSDDADAFTI 359 D VP + +L G M P+G +++ DA A Sbjct: 289 --LDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPE-HIDAGALLN 345 Query: 360 DMLNKAGVVLVPGLDFGPATAHR-YIRLSYAT-SMENLQEAVRRLEKYLAER 409 + + + V VPG F A + +RLS+ T E ++ V RL K +A + Sbjct: 346 EAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIASK 397 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,178,017 Number of extensions: 45672 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 7 Length of query: 412 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 324 Effective length of database: 1,203,190 Effective search space: 389833560 Effective search space used: 389833560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)