BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0010.p
         (497 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312876|ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate ...   923   0.0  

>gi|300312876|ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/497 (88%), Positives = 469/497 (94%), Gaps = 3/497 (0%)

Query: 1   MKYSDLRDFISQLQLSGELKRISTPVSPYLEITEICDRTLRASGPALIFDKVEGKNIPVL 60
           MKY+DLRDFISQLQ  GELKR+S PVS +LE+TEICDRTLRA GPAL+F+ V+ KNIPVL
Sbjct: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEICDRTLRAEGPALLFEHVDQKNIPVL 60

Query: 61  ANLFGTPRRVALGMGAEDVGELRRIGHLLAKLKEPEPPKGFKDVMGLGTLVKSLWDMAPK 120
           ANLFGTP RVALGMGA+++GELRRIGHLLA+LKEPEPPKG KDV+ LG+LVKSLWDMAPK
Sbjct: 61  ANLFGTPHRVALGMGADNIGELRRIGHLLARLKEPEPPKGIKDVLDLGSLVKSLWDMAPK 120

Query: 121 ERSSAPCQDIVWEGNDVDLDRLPIQHCWPGDVAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           ER SAPCQD+VWEG DVDL RLPIQHCWPGD+APLITWGLV+TKGP+KKRQNLGIYRQQV
Sbjct: 121 ERGSAPCQDVVWEGKDVDLSRLPIQHCWPGDIAPLITWGLVVTKGPHKKRQNLGIYRQQV 180

Query: 181 LGRNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           LG NKVIMRWLAHRGGALDFREHCIANPGKPYP+ VALGADPATILGAVTPVPD+LSEYQ
Sbjct: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPVVVALGADPATILGAVTPVPDNLSEYQ 240

Query: 241 FAGLLRGSRTELVKAIGSELRVPASAEIVLEGHIYPDSAENPHPSGYEHALEGPYGDHTG 300
           FAGLLRGSRTELVKA+GSELRVPASAEIVLEGHIYPD     H SG+EHALEGPYGDHTG
Sbjct: 241 FAGLLRGSRTELVKAMGSELRVPASAEIVLEGHIYPDEK---HASGFEHALEGPYGDHTG 297

Query: 301 YYNEQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFIPLLQKQFSEITD 360
           YYNEQDWFPVFTIDRITMRRD IYHSTYTGKPPDEPAVLGVALNEVF+PLLQKQF+EITD
Sbjct: 298 YYNEQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITD 357

Query: 361 FYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEV 420
           FYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDWKEV
Sbjct: 358 FYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEV 417

Query: 421 IWAITTRVDPVRDTVMVDNTPIDYLDFASPVSGLGSKMGIDATNKWPGETNREWGTTIAM 480
           IWAITTRVDPVRDTVMVDNTPIDYLDFASP+SGLGSKMGIDATNKWPGET+REWGT I M
Sbjct: 418 IWAITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVM 477

Query: 481 TDAVKKRVDGIWDELGI 497
            + VKKRVD IW +LGI
Sbjct: 478 DEDVKKRVDAIWQDLGI 494


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,697,249
Number of extensions: 77004
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,198,455
Effective search space: 488969640
Effective search space used: 488969640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)