BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0008.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311799|ref|YP_003775891.1| two component heavy metal respo...   188   2e-49
gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr...   146   1e-36
gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ...   121   3e-29
gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z...   121   4e-29
gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr...    91   8e-20

>gi|300311799|ref|YP_003775891.1| two component heavy metal response
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 230

 Score =  188 bits (478), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 96/99 (96%)

Query: 82  LRIGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 141
           LRIGDLQIDLLSRKA+R   RIDLTAKEFALLA+MARRQGEILSKTAIAELVWDMNFDSN
Sbjct: 126 LRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDMNFDSN 185

Query: 142 TNVVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRAS 180
           TNVVEVAIKRLRAKIDAPF+QKLLHT+RGMGYVLEPRA+
Sbjct: 186 TNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRAT 224


>gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score =  146 bits (369), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/70 (95%), Positives = 68/70 (97%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGL+LSQALTLFTTPVVYLYLDRAHYWY
Sbjct: 972  MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYWY 1031

Query: 61   MNKKEARAAR 70
            M KKEAR AR
Sbjct: 1032 MRKKEARQAR 1041


>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two
           component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 223

 Score =  121 bits (304), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 74/100 (74%), Gaps = 4/100 (4%)

Query: 84  IGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSNTN 143
           I DLQ+D +  K  R    I LT KEF LL ++ +RQGE LS++ IA  +WDMNFDS+TN
Sbjct: 128 IADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDMNFDSDTN 187

Query: 144 VVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRASEAP 183
           VV+VAIKRLRAKIDAPFD+KL+HT+R +GY+     SE P
Sbjct: 188 VVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMF----SEEP 223


>gi|300309361|ref|YP_003773453.1| response regulator for
           cobalt/zinc/cadmium resistance transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  121 bits (303), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 73/90 (81%)

Query: 86  DLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSNTNVV 145
           D+ +D+L RK  R+  RIDLTAKEFALL ++ RR GE+LS+  IA  VWDMNFDS+TNVV
Sbjct: 130 DVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDMNFDSDTNVV 189

Query: 146 EVAIKRLRAKIDAPFDQKLLHTIRGMGYVL 175
           +VA++RLRAK+D  F++KLLHT+ GMGYV 
Sbjct: 190 DVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219


>gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1078

 Score = 90.5 bits (223), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 6/75 (8%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTM ALL  +PL +GHG G+ELR+PLG ++VGGLV+SQ LTL+TTPVVYLY++R   W 
Sbjct: 1004 MTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWS 1063

Query: 61   ------MNKKEARAA 69
                   NK E  AA
Sbjct: 1064 KRRFGRKNKTETSAA 1078


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,565
Number of extensions: 20240
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 9
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)