BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0007.p
         (85 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr...   150   3e-38
gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr...    86   5e-19
gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr...    82   8e-18

>gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score =  150 bits (378), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/74 (95%), Positives = 72/74 (97%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGL+LSQALTLFTTPVVYLYLDRAHYWY
Sbjct: 972  MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYWY 1031

Query: 61   MNKKEARAARKAAR 74
            M KKEAR ARKAAR
Sbjct: 1032 MRKKEARQARKAAR 1045


>gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1078

 Score = 86.3 bits (212), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 6/75 (8%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYW- 59
            MTTM ALL  +PL +GHG G+ELR+PLG ++VGGLV+SQ LTL+TTPVVYLY++R   W 
Sbjct: 1004 MTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWS 1063

Query: 60   -----YMNKKEARAA 69
                   NK E  AA
Sbjct: 1064 KRRFGRKNKTETSAA 1078


>gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump
            transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1048

 Score = 82.0 bits (201), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/54 (74%), Positives = 44/54 (81%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLD 54
            MTTM ALL  LPLMLG G GSELR+PLG  MVGGL++SQ LTLFTTPV+YL  D
Sbjct: 962  MTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFD 1015


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 231,551
Number of extensions: 7949
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 3
Length of query: 85
Length of database: 1,619,870
Length adjustment: 55
Effective length of query: 30
Effective length of database: 1,359,445
Effective search space: 40783350
Effective search space used: 40783350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)