BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0005.p (1047 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 1819 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1040 0.0 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 993 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 365 e-101 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 347 2e-96 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1819 bits (4711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 900/1043 (86%), Positives = 968/1043 (92%), Gaps = 7/1043 (0%) Query: 1 VSATFIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVSASLPGGSPETMASN 60 VSA FIKRPIGTTLLA+AILLVG+AVWPLLPVAPLPQVDFPTIQV+A LPGGSPETMASN Sbjct: 3 VSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASN 62 Query: 61 VAQPLERQFSLIAGLSQMTSQSALGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPSN 120 VAQPLERQFSLIAGLSQMTSQS LGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP+N Sbjct: 63 VAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPAN 122 Query: 121 LPNPPTFRKVNPADSPIMIMSVQSDALPLTQVSDFADNILAQQISQISGVGLVNVNGAQK 180 LPNPPTFRK+NPADSPIMIMSVQS+ALPLT V+D+ADNILAQQISQISGVGLVNVNG QK Sbjct: 123 LPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQQK 182 Query: 181 PAVRIQVDPAKLATLNLSLEDIRGVIATTTVNQPKGTVDGTHQSFTVYTNDQLLSADPWN 240 PAVRIQVDPAKLATL LSLEDIRGVIATTTVNQPKGTVDG Q+FTVYTNDQLL A+ WN Sbjct: 183 PAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQWN 242 Query: 241 DMVLAYRAGAPIHVRDIGVAIDAPENMKIAAWAFSGAAAETDTTLTNGRSIVLAITAMP- 299 DMVLA+R GAPI V+DIG+A+D PEN KIAAWAF+GAA D ++TNGRSIVLAIT P Sbjct: 243 DMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGRSIVLAITKQPG 302 Query: 300 -RLRAAIPXIKAAMPRLRAAIPASVHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVIF 358 + + IKAAMPRLRAAIPA++HVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVIF Sbjct: 303 ANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVIF 362 Query: 359 VFLRNIAATLIPSITVPLAIMGTAAVMYLVGYSLDNLSLMALTIAVGFVVDDAIVMLENI 418 VFLRN+AATLIPS+TVPLAIMGTA VMY+VGYSLDNLSLMALTIAVGFVVDDAIVMLENI Sbjct: 363 VFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLENI 422 Query: 419 YRYVEEGMSPMEAALKGSSEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLT 478 YRYVEEGM+P+EAALKG+ EIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLT Sbjct: 423 YRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLT 482 Query: 479 IGVSVIISLTLTPMLCSRFLKNSHAEQHGKMYQLFERFFDALLNGYKRGLDLVLRHQFIT 538 I VSVIISLTLTPMLCSRFLKN H ++HGK+YQ FER FDA+L GYKRGLD+V++HQFIT Sbjct: 483 IAVSVIISLTLTPMLCSRFLKNEHGQRHGKLYQWFERCFDAMLAGYKRGLDVVMKHQFIT 542 Query: 539 LMSFLATVAVTVALFIFIPKGFFPQQDNGVIAGFAESAQDISSSAMHRRLLQVADVVRKD 598 LMSF+AT+A+T LFIFIPKGFFPQQDNGVI GFAESAQD SS+AMH RLL+VA+VVR+D Sbjct: 543 LMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMHERLLKVAEVVRQD 602 Query: 599 PDVTGFAMSAGSTTFNTGNFFIALKPKSEGRTLDASEIITHLRPQVAKIQGVNLFMQASQ 658 PDV GFAMSAGSTTFNTG FFIALKPK +GRT +A EII LRP+VA+I+GVNLFMQASQ Sbjct: 603 PDVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLRPKVARIEGVNLFMQASQ 662 Query: 659 DINVGGRLSRTQYQYTLTDSNLDELNVWAPKLVDRLRRLKQLTDVASDQQNSAATATITI 718 DINVGGRLSRTQYQYT+TD++LDELNVWAP++++R R+L QLTDVASDQQN AA A ITI Sbjct: 663 DINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTDVASDQQNQAAAAVITI 722 Query: 719 DRARASSFGISPALIDATIYDAIGQRQVAQYFTQVNSYRVILEVTPELQKDPALFNKLYL 778 DRARASSFGISP+LIDATIYDAIGQRQVAQYFTQ+NSYRVILEVTP LQKDPALF+KLYL Sbjct: 723 DRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPALQKDPALFDKLYL 782 Query: 779 TSPLTGQQVPLSTFIKVDTTKTAYLSISHQSQFPAVTISFNLAHGVALGEAVDAINQAQA 838 TSPLTGQQVPLSTF+K+DT+KT+YLSISHQSQFPAVTISFNLA GV+LGEAVD I + + Sbjct: 783 TSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKTKD 842 Query: 839 EMGVPTTLTGAFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPS 898 +MGVP TL G FQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPS Sbjct: 843 QMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPS 902 Query: 899 AGVGALLILMAGGYDLSV-----IALIGIIXKKNGIMMIDFALTAERQHGMKPEEAIYQA 953 AGVGALLILMAGGYDLSV I L+ I KKNGIMMIDFALTAER GMKPE+AIYQA Sbjct: 903 AGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQA 962 Query: 954 CLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYL 1013 CLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGL+LSQALTLFTTPVVYL Sbjct: 963 CLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYL 1022 Query: 1014 YLDRAHYWYMNKKEARAARKAAR 1036 YLDRAHYWYM KKEAR ARKAAR Sbjct: 1023 YLDRAHYWYMRKKEARQARKAAR 1045 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/1025 (52%), Positives = 724/1025 (70%), Gaps = 23/1025 (2%) Query: 2 SATFIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVSASLPGGSPETMASNV 61 S FI RP+ T+LL LAILLVGI + LLP++ LP+VD+PTIQV PG SP+ M S+V Sbjct: 4 SRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSV 63 Query: 62 AQPLERQFSLIAGLSQMTSQSALGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPSNL 121 PLERQF + GL QM+S S+ G++ ITLQF+L+ ++D A +VQAAINA + LPS+L Sbjct: 64 TAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDL 123 Query: 122 PNPPTFRKVNPADSPIMIMSVQSDALPLTQVSDFADNILAQQISQISGVGLVNVNGAQKP 181 P PP + KVNPAD+PI+ ++V S+ +PL +V D D +AQ+ISQ+SGVGLV+++G Q+P Sbjct: 124 PMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQRP 183 Query: 182 AVRIQVDPAKLATLNLSLEDIRGVIATTTVNQPKGTVDGTHQSFTVYTNDQLLSADPWND 241 AVR+Q++P +A L L+L+D+R I VNQ KG+ DG ++ T+ NDQL SAD + + Sbjct: 184 AVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRN 243 Query: 242 MVLAYRAGAPIHVRDIGVAIDAPENMKIAAWAFSGAAAETDTTLTNGRSIVLAITAMPRL 301 +++AY+ GAPI V D+ +D EN+++ AWA + A + G +++ Sbjct: 244 LIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVI--------- 294 Query: 302 RAAIPXIKAAMPRLRAAIPASVHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVIFVFL 361 A + IK +P+L+A++P ++ V+ L DRT TIRASV+DV+F L+L++ALVVMVIFVFL Sbjct: 295 -AVVDSIKKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFL 353 Query: 362 RNIAATLIPSITVPLAIMGTAAVMYLVGYSLDNLSLMALTIAVGFVVDDAIVMLENIYRY 421 RN+ AT+IPS+ VPL+++GT A+MYL G+S++NL+LMALTIA GFVVDDAIVM+ENI RY Sbjct: 354 RNVPATIIPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRY 413 Query: 422 VEEGMSPMEAALKGSSEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLTIGV 481 +EEGM PM+AALKG+ +IGFTIIS++ SL+AV IPLL MG +VGRLF EFAVT+ ++I + Sbjct: 414 IEEGMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILI 473 Query: 482 SVIISLTLTPMLCSRFLKNSHAEQHGKMYQLFERFFDALLNGYKRGLDLVLRHQFITLMS 541 S ++SLTLTPM+C+R L++ EQ G Y ++FFD ++ Y L VL Q +TL+ Sbjct: 474 SAVVSLTLTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLV 533 Query: 542 FLATVAVTVALFIFIPKGFFPQQDNGVIAGFAESAQDISSSAMHRRLLQVADVVRKDPDV 601 AT+ +TV L++F+PKGFFP QD GVI G +E+ Q IS SAM + Q+A VV +DP V Sbjct: 534 AAATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDPAV 593 Query: 602 TGFAMSAG----STTFNTGNFFIALKPKSEGRTLDASEIITHLRPQV-AKIQGVNLFMQA 656 G + T N+G I LKP + R + A+++I L+ ++ A++ G+ L+MQ Sbjct: 594 ESLTSFIGVDGTNATLNSGRMLINLKPH-DVREVSATDVIRRLQGKLAAEVPGITLYMQP 652 Query: 657 SQDINVGGRLSRTQYQYTLTDSNLDELNVWAPKLVDRLRRLKQLTDVASDQQNSAATATI 716 QD+ + +SRTQYQ+TL D++ L+ W PKL+ RL++ +L DVA++ Q+ A I Sbjct: 653 VQDLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQAYI 712 Query: 717 TIDRARASSFGISPALIDATIYDAIGQRQVAQYFTQVNSYRVILEVTPELQKDPALFNKL 776 IDR AS GI+ A ID +Y+A GQR ++ +TQ N YRV++EV PE Q PA + + Sbjct: 713 EIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALDSI 772 Query: 777 YLTSPLTGQQVPLSTFIKVDTTKTAYLSISHQSQFPAVTISFNLAHGVALGEAVDAINQA 836 YL + G +VPLS+ V T +TA L ++H QFPA T+SFNLA G +LGEAV AI A Sbjct: 773 YLVTS-GGGKVPLSSIATV-TERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAA 830 Query: 837 QAEMGVPTTLTGAFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL 896 + E+G+P + FQG A AF SLS+ +LI AA++ +YIVLG+LYESYIHP+TILSTL Sbjct: 831 EEEIGMPASTVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTL 890 Query: 897 PSAGVGALLILMAGGYD-----LSVIALIGIIXKKNGIMMIDFALTAERQHGMKPEEAIY 951 PSAGVGALL LM G D + I L+ I KKN IMMIDFAL AER G P EAIY Sbjct: 891 PSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIY 950 Query: 952 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVV 1011 QACLLRFRPI+MTTM ALL LPLMLG G GSELR+PLG MVGGL++SQ LTLFTTPV+ Sbjct: 951 QACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVI 1010 Query: 1012 YLYLD 1016 YL D Sbjct: 1011 YLGFD 1015 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/1091 (46%), Positives = 731/1091 (67%), Gaps = 75/1091 (6%) Query: 1 VSATFIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVSASLPGGSPETMASN 60 +S FI+RPI TTLL + I L GI + LLPV+PLPQVD+PTI +SAS+PG SPETMA+ Sbjct: 3 ISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMAAT 62 Query: 61 VAQPLERQFSLIAGLSQMTSQSALGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPSN 120 VA PLER IAG+++MTS S+ ST+ITLQFDL+R+ID AA DVQAA+NA+ LP+ Sbjct: 63 VATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLPTG 122 Query: 121 LPNPPTFRKVNPADSPIMIMSVQSDALPLTQVSDFADNILAQQISQISGVGLVNVNGAQK 180 +P+ PT+RKVNPAD+PI+I+++ SD + Q+ D AD+I+AQ++SQ+ GVG V+V G+ + Sbjct: 123 MPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQ 182 Query: 181 PAVRIQVDPAKLATLNLSLEDIRGVIATTTVNQPKGTVDGTHQSFTVYTNDQLLSADPWN 240 PAVRI+++P L + D+R +A T N+PKG ++ +++ +Y NDQ +A + Sbjct: 183 PAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAEYA 242 Query: 241 DMVLAYRAGAPIHVRDIGVAIDAPENMKIAAWAFSGAAAETDTTLTNGR-SIVLAITAMP 299 ++++YR G P+ V+D+ D+ +++ A +NG+ S+++ I P Sbjct: 243 PLIVSYRNGTPVRVQDVAEVRDSVADVRNAGS-------------SNGKPSVLIIINRQP 289 Query: 300 --RLRAAIPXIKAAMPRLRAAIPASVHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVI 357 + + ++ +P+L+A+IP+++ + ++DRT TIRAS+++ EFTL+L++ALV+MV+ Sbjct: 290 GANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVV 349 Query: 358 FVFLRNIAATLIPSITVPLAIMGTAAVMYLVGYSLDNLSLMALTIAVGFVVDDAIVMLEN 417 F+FLRN ATLIP++ VP++++GT VMYL G+SLDNLSLMALTIA GFVVDDAIV+LEN Sbjct: 350 FLFLRNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLEN 409 Query: 418 IYRYVEEGMSPMEAALKGSSEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTL 477 I R++E GM P +AAL G+ E+GFT++S+S+SL+AVFIP+L+M GIVGRLFREFA+T+++ Sbjct: 410 ISRHIESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSV 469 Query: 478 TIGVSVIISLTLTPMLCSRFLKNSHA-------EQHGKMYQLFER---FFDALLNGYKRG 527 I VS+++SLT TPM+C++ L++ A +H + ++ ++ F+ +L Y+R Sbjct: 470 AILVSLVVSLTTTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRT 529 Query: 528 LDLVLRHQFITLMSFLATVAVTVALFIFIPKGFFPQQDNGVIAGFAESAQDISSSAMHRR 587 L LR + ++ LAT+A+ V L+ IPKGFFPQQD G + G Q IS AM + Sbjct: 530 LAWALRAAPLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTK 589 Query: 588 LLQVADVVRKDPDVTGFAMSAGSTTFNTGNFFIALKPKSEGRTLDASEIITHLRPQVAKI 647 L + D+VR DP V+ G N G ++ LKP SE R A +++ LR + AK+ Sbjct: 590 LNEFIDIVRADPAVSDVVAFTGGQRRNGGFMYVTLKPLSE-RKDSADKVVARLRIKTAKV 648 Query: 648 QGVNLFMQASQDINVGGRLSRTQYQYTLTDSNLDELNVWAPKLVDRLRRLKQLTDVASDQ 707 G +F+ QDI +G R S +QY+Y+L ++ L +W PK+ L LK+L D+++DQ Sbjct: 649 AGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQ 708 Query: 708 QNSAATATITIDRARASSFGISPALIDATIYDAIGQRQVAQYFTQVNSYRVILEVTPELQ 767 Q++ T+TIDR A G++P LID+T+ D GQRQ++ ++ +N Y V++E P+ Sbjct: 709 QDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYW 768 Query: 768 KDPALFNKLYLT-------SPLT-----------------------------GQQVPLST 791 + P Y++ SP T +Q+PL+ Sbjct: 769 QSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAA 828 Query: 792 FIKVDTTKTAYLSISHQSQFPAVTISFNLAHGVALGEAVDAINQAQAEMGVPTTLTGAFQ 851 F + + T T+ LS+SH+ QF A T+SFNLA GV+L +A AI++A A++GVPT + G F Sbjct: 829 FSRFEPTTTS-LSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFA 887 Query: 852 GTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMAGG 911 GTA AF S SSQP LI AL+AVYIVLG+LYES IHP+TI+STLPSAGVGALL LM G Sbjct: 888 GTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTG 947 Query: 912 YDLSVIALIGI-----IXKKNGIMMIDFALTAERQHGMKPEEAIYQACLLRFRPIMMTTM 966 D S+IALIG+ I KKN IMM+DFA+ AER GM P +AI++AC LRFRPIMMTTM Sbjct: 948 TDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTM 1007 Query: 967 CALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYW----- 1021 ALL +PL +GHG G+ELR+PLG ++VGGLV+SQ LTL+TTPVVYLY++R W Sbjct: 1008 AALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRF 1067 Query: 1022 -YMNKKEARAA 1031 NK E AA Sbjct: 1068 GRKNKTETSAA 1078 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust. Identities = 301/1049 (28%), Positives = 514/1049 (48%), Gaps = 64/1049 (6%) Query: 5 FIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVSASLPGGSPETMASNVAQP 64 FI RP+ +LA+ I+L G LPV+ P + PTI V+A+ PG + +T+ +V Sbjct: 5 FIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSL 64 Query: 65 LERQFSLIAGLSQMTSQS-ALGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPSNLPN 123 +E++ + GL + SQS A G QIT+ F N D AA+DVQ + +LP+ + Sbjct: 65 IEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAVTQ 124 Query: 124 PPTFRKVNPADSPIMI---MSVQSDALPLTQVSDFADNILAQQISQISGVGLVNVNGAQK 180 +V + S ++ +S L + D+ + +I ++ GVG + G ++ Sbjct: 125 QGV--QVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTER 182 Query: 181 PAVRIQVDPAKLATLNLSLEDIRGVIATTTVNQPKGTVD-----GTHQ-SFTVYTNDQLL 234 A+RI +DP KL LNL+ D+ I GT+ GT Q + TV N QL Sbjct: 183 -AMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLT 241 Query: 235 SADPWNDMVLAYRA-GAPIHVRDIGVAIDAPENMKIAAWAFSGAAAETDTTLTNGRSIVL 293 S + + +++L A GA + +RD+ A G + +T L S + Sbjct: 242 SPEQFGNIILRANANGATVRLRDV------------ARVEVGGQSYDTSGRLDGKPSSFI 289 Query: 294 AITAMPRLRA--AIPXIKAAMPRLRAAIPASVHVNTLIDRTQTIRASVEDVEFTLVLTIA 351 + P A + M L P V D ++ ++ S+E+V TL+ I Sbjct: 290 GVQLSPTANALGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIV 349 Query: 352 LVVMVIFVFLRNIAATLIPSITVPLAIMGTAAVMYLVGYSLDNLSLMALTIAVGFVVDDA 411 LV +V+F+FL+NI T+IP+I VP+A++GT A + L G+S++ L++ + +A+G +VDDA Sbjct: 350 LVFLVMFLFLQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDA 409 Query: 412 IVMLENIYRYV-EEGMSPMEAALKGSSEIGFTIISISVSLVAVFIPLLLMGGIVGRLFRE 470 IV++EN+ R + EEG+SP +A K +I +I I++ L+AVFIP+ GG VG ++R+ Sbjct: 410 IVVVENVERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQ 469 Query: 471 FAVTVTLTIGVSVIISLTLTPMLCSRFLK---NSHAEQHGKMYQLFERFFDALLNGYKRG 527 F++++ ++ SV+++ TLTP LC+ LK H + + F R F++ +GY+ Sbjct: 470 FSLSMVASMVFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGI 529 Query: 528 LDLVLRHQFITLMSFLATVAVTVALFIFIPKGFFPQQDNGVIAGFAESAQDISSSAMHRR 587 + +L ++ ++ VA L++ +P F P +D G I + S+S Sbjct: 530 IGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAV 589 Query: 588 LLQVADVVRKDPDVT------GFAMSAGSTTFNTGNFFIALKPKSE-GRTLDASEIITHL 640 + Q+ + KDP V G++ S N F LK S+ ++ A I Sbjct: 590 VKQIEEYYLKDPAVEHAIAVLGYSFSGNGQ--NAALVFTPLKDWSQRDKSQSADAIAGKA 647 Query: 641 RPQVAKIQGVNLFMQASQDI----NVGGRLSRTQYQYTLTDSNLDELNVWAPKLVDRLRR 696 ++I+ +F I N G R Q + L + L + +++ + Sbjct: 648 FGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQAR---NQILGMASQ 704 Query: 697 LKQLTDVASDQQNSAATATITIDRARASSFGISPALIDATIYDAIGQRQVAQYFTQVNSY 756 K L V + A + IDR +A++ G+ + I++ + A+G V + Sbjct: 705 SKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQ 764 Query: 757 RVILEVTPELQKDPALFNKLYLTSPLTGQQVPLSTFIKVDTTKTAYLSISHQSQFPAVTI 816 RVI++ + + P LY + +G VP S F+ I + +PA+ I Sbjct: 765 RVIVQADAKRRLQPEDLTNLYARNS-SGTMVPFSAFVTAKWINGPVQLIRYNG-YPAMKI 822 Query: 817 SFNLAHGVALGEAVDAINQAQAEMGVPTTLTGAFQGTAKAFGDSLSSQ--PYLIAAALIA 874 + A G + GEA+ + A++ P F+ T ++ + S P L A +LIA Sbjct: 823 AGGAAPGRSTGEAMAEMESFVAKL--PPGF--GFEWTGQSLEEKTSGNQAPALYALSLIA 878 Query: 875 VYIVLGLLYESYIHPLTILSTLPSAGVGALLILMAGG------YDLSVIALIGIIXKKNG 928 V++VL LYES PL ++ +P +GALL + + + +IA++G+ KN Sbjct: 879 VFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGL-SAKNA 937 Query: 929 IMMIDFALTAERQHGMKPEEAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRP 988 I++I+FA + Q G EA +A LRFRPI+MT++ +L LPL + GAGS +R Sbjct: 938 ILIIEFAKDLQAQ-GKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRA 996 Query: 989 LGYAMVGGLVLSQALTLFTTPVVYLYLDR 1017 +G ++GG++ + L +F P+ ++ + + Sbjct: 997 IGTGVMGGMITATVLAVFLVPIFFVVVRK 1025 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 347 bits (891), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 298/1054 (28%), Positives = 518/1054 (49%), Gaps = 84/1054 (7%) Query: 5 FIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVSASLPGGSPETMASNVAQP 64 FI RPI ++AL I+L G+ LP+A P V PT+ ++A+ PG +P+TM V Sbjct: 5 FIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVISL 64 Query: 65 LERQFSLIAGLSQMTSQS-ALGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPSNL-P 122 +ER+ S + L S + G+ QI++ F + + A +DVQ + A +LP + Sbjct: 65 IERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTVRQ 124 Query: 123 NPPTFRKVNPADSPIMIMSVQS--DALPLTQVSDFADNILAQQISQISGVGLVNVNGAQK 180 N T + A S ++++S+ S +++D+ + +++ ++ GVG V + GA++ Sbjct: 125 NGVTVE--SAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGAEQ 182 Query: 181 PAVRIQVDPAKLATLNLSLEDIRGVIATTTVNQPKG------TVDGTHQSFTVYTNDQLL 234 A+RI +DP KL L++ DI I+ G V G + + QL Sbjct: 183 -AMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQ 241 Query: 235 SADPWNDMVLAYRA-GAPIHVRDIGVAIDAPENMKIAAWAFSGAAAETDTTLTNGR-SIV 292 S + +VL +A G+ + + D+ +++ A +++ A E NG+ + V Sbjct: 242 SPAQFAAIVLKAKADGSRVLLGDVA-------RVELGAQSYAFANRE------NGKPAGV 288 Query: 293 LAITAMPRLRAA--IPXIKAAMPRLRAAIPASVHVNTLIDRTQTIRASVEDVEFTLVLTI 350 A+ P A I+A M LR ++P + + + ++ S++ V TL+ + Sbjct: 289 AAVQLSPGANAVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAM 348 Query: 351 ALVVMVIFVFLRNIAATLIPSITVPLAIMGTAAVMYLVGYSLDNLSLMALTIAVGFVVDD 410 LV +V+++FL+N+ T+IP+I P+A++GT AVM L GYS++ L++ + +A+G +VDD Sbjct: 349 VLVFLVMYLFLQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDD 408 Query: 411 AIVMLENIYRYV-EEGMSPMEAALKGSSEIGFTIISISVSLVAVFIPLLLMGGIVGRLFR 469 AIV++EN+ R + EG+ P EA +K EI II I++ L AVFIP+ L GG VG ++R Sbjct: 409 AIVVVENVERIMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYR 468 Query: 470 EFAVTVTLTIGVSVIISLTLTPMLCSRFLKNSHAEQHGK--MYQLFERFFDALLNGYKRG 527 +F+V + ++I S ++L+LTP LC+ L+ A H K + F R F+ L Y+ Sbjct: 469 QFSVAMAVSILFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESA 528 Query: 528 LDLVLRHQFITLMSFLATVAVTVALFIFIPKGFFPQQDNGVIAGFAESAQDISSSAMHRR 587 L ++ ++ + A + V +P F P++D G + D ++ R Sbjct: 529 LGRLIARGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARA 588 Query: 588 LLQVADVVRKDPD------VTGFAMSAGSTTFNTGNFFIALKPKSEGRTLDASE------ 635 + Q ++ D V GF S N F LK E + ++ Sbjct: 589 VDQFERYLKGREDIGANLSVLGFGFSGSGP--NAAMAFTELKDWKERKGSTSAAEAMAAQ 646 Query: 636 ----------IITHLRPQVAKIQGVNLFMQASQDINVGGRLSRTQYQYTLTDSNLDELNV 685 +++ L P + ++ + F QD R Y + +L Sbjct: 647 AAMESGVDGMVMSLLPPAIEELGNSSGFAMRLQD--------RANQGYAALKAAEAQLLA 698 Query: 686 WAPKLVDRLRRLKQLTDVASDQQNSAATATITIDRARASSFGISPALIDATIYDAIGQRQ 745 A K ++L+ V SD + A+ + IDR +A++ G+S + I T+ A+G Sbjct: 699 LAAK-------SRKLSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFY 751 Query: 746 VAQYFTQVNSYRVILEVTPELQKDPALFNKLYLTSPLTGQQVPLSTFIKVDTTKTAYLSI 805 V + +VIL+ + KLY+ + +G VPL+ +K + + A + Sbjct: 752 VNDFPNAGRMQQVILQAQASARMQLEDVMKLYVRNQ-SGGMVPLAELVKA-SWREAPTQL 809 Query: 806 SHQSQFPAVTISFNLAHGVALGEAVDAINQAQAEMGVPTTLTGAFQGTAKAFGDSLSSQP 865 FPAV IS + A GVA GEA+ + + ++ P A+ G + S + P Sbjct: 810 QRYQGFPAVRISGSAAPGVASGEAMAEMERLAQQL--PPGFAVAWTGQSLQERLSAAQAP 867 Query: 866 YLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMAGG------YDLSVIAL 919 L+A +++ V++VL LYES+ PL+++ +P VGA+ ++ + + +I + Sbjct: 868 MLMALSMLVVFLVLAALYESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITV 927 Query: 920 IGIIXKKNGIMMIDFALTAERQHGMKPEEAIYQACLLRFRPIMMTTMCALLSGLPLMLGH 979 IG + KN I++++FA R GM EA +A +LR RPI+MT++ L +PLML Sbjct: 928 IG-LSAKNAILIVEFARQL-RSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLAS 985 Query: 980 GAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYL 1013 GA +E +R +G + GG+V + L + PV ++ Sbjct: 986 GASAETQRAIGTGVFGGMVSATVLAVLFVPVFFV 1019 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,764,305 Number of extensions: 108251 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 440 Number of HSP's successfully gapped: 12 Length of query: 1047 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 952 Effective length of database: 1,170,045 Effective search space: 1113882840 Effective search space used: 1113882840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)