BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0003.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311797|ref|YP_003775889.1| membrane-fusion protein [Herbas...   111   2e-26
gi|300310851|ref|YP_003774943.1| RND family efflux transporter M...    52   1e-08

>gi|300311797|ref|YP_003775889.1| membrane-fusion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  111 bits (277), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 75/107 (70%), Gaps = 4/107 (3%)

Query: 1   MTTSLTPKRST--LLISVAVLVALGGGAWSLFHRADAVAASKEQAQQAPSISVTTVQVQE 58
           M+TS TP R +   +   A L+  G G W+   RA A  A + QA+  P +SVT   VQE
Sbjct: 1   MSTSPTPPRRSRLAIALAAALLMAGIGGWTHLQRASA--ADQPQAKAPPPVSVTLASVQE 58

Query: 59  RDIPLYLSGVGTVTANASVVVKVRIDGQLDKVGFTEGQDVKAGQLLA 105
           RD+P YL+GVGTVTANASVVVK RIDGQL+KVGF EG+DVK GQLLA
Sbjct: 59  RDLPQYLAGVGTVTANASVVVKTRIDGQLEKVGFQEGEDVKKGQLLA 105


>gi|300310851|ref|YP_003774943.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score = 52.0 bits (123), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 59  RDIPLYLSGVGTVTANASVVVKVRIDGQLDKVGFTEGQDVKAGQLLA 105
           +D+ ++L+G+G VT  A+  V+ R+DGQL K+ + EGQ VKAG LLA
Sbjct: 42  QDVNVFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAGDLLA 88


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 320,057
Number of extensions: 11125
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)