BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0002.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311796|ref|YP_003775888.1| outer membrane channel lipoprot...   112   8e-27
gi|300310854|ref|YP_003774946.1| NodT family protein [Herbaspiri...    61   2e-11
gi|300313898|ref|YP_003777990.1| outer membrane drug efflux lipo...    54   2e-09

>gi|300311796|ref|YP_003775888.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  112 bits (279), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 62/66 (93%)

Query: 1   VQNQAVKAAQLSERLALSQYQAGTTTYLSVVTTQAASLTNQRTAVTLLGRQLVASVALIK 60
           VQ QAV++AQL+ERLA+ QY+AGT TYLSVVTTQAASLTNQR AVTLLGRQLVASVALIK
Sbjct: 438 VQAQAVQSAQLAERLAMRQYEAGTVTYLSVVTTQAASLTNQRNAVTLLGRQLVASVALIK 497

Query: 61  ATGGGW 66
           ATGGGW
Sbjct: 498 ATGGGW 503


>gi|300310854|ref|YP_003774946.1| NodT family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 507

 Score = 60.8 bits (146), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 52/74 (70%)

Query: 1   VQNQAVKAAQLSERLALSQYQAGTTTYLSVVTTQAASLTNQRTAVTLLGRQLVASVALIK 60
           VQ +A++AA+ +  L  +QY+AGT +Y++V+T QA +L+ + +++ +L R++ ASV L K
Sbjct: 413 VQGEALQAARQAVTLVNNQYKAGTVSYVNVITAQATALSAELSSLNILNRRMAASVLLAK 472

Query: 61  ATGGGWTVADIDKV 74
           A GGGW    +D +
Sbjct: 473 ALGGGWDERSLDDL 486


>gi|300313898|ref|YP_003777990.1| outer membrane drug efflux
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 5   AVKAAQLSERLALSQYQAGTTTYLSVVTTQAASLTNQRTAVTLLGRQLVASVALIKATGG 64
           A+ +A+    +A S+Y+ G T YL V+T Q + L ++R A  L+G++L+ SV LIKA GG
Sbjct: 408 AIASARRVLEIASSRYEGGATPYLDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGG 467

Query: 65  GW 66
            W
Sbjct: 468 DW 469


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.120    0.310 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 201,674
Number of extensions: 5748
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)