BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0328.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...   362   e-101
gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...    68   7e-13

>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  362 bits (928), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 166/229 (72%), Positives = 193/229 (84%)

Query: 22  AAAHAAGYPQQREADWIAPSFTFHTGETLNNFKLHYITVGDPAHPAVLLLHGTYRSGADM 81
           AA  AA  P+  E DW+AP F FHTG+TL N +LHY+T+GD A+PAVL+LHGTY+S   M
Sbjct: 25  AATQAADPPRPVEGDWVAPRFQFHTGQTLENLRLHYVTLGDRANPAVLVLHGTYQSAQAM 84

Query: 82  VARDFAGEMLGPGQPLDASKYYVIMPDAIGVGKSAKPSDGLRTKFPQYNYADMVLAQYRL 141
           +++DF G++ GPGQPLDASKY++I+PD IGVGKS+KPSDGLR  FPQYNYADMVLAQYR+
Sbjct: 85  LSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSSKPSDGLRAAFPQYNYADMVLAQYRM 144

Query: 142 VTEGLGVKHLRLVMGNSMGGMQTWMWGETYPAMMDGLVPMASQPIEMASRNWMMRRMLVE 201
           +TEG+G+ HLRL++GNSMGGMQTW+WG TYP   DGLVPMASQP EMASRNWMMRRMLVE
Sbjct: 145 LTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFADGLVPMASQPTEMASRNWMMRRMLVE 204

Query: 202 SIKQDPAWNGGNYTTQPPSLRLANTMFGIATAGGTLAYQALAPTRXPRD 250
           SIKQDPAWN GNYTTQPPSLRLAN MF  AT GGTLAYQA+A +    D
Sbjct: 205 SIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGTLAYQAMAGSHAQAD 253


>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 24/188 (12%)

Query: 47  GETLNNFKLHYITVGD---PAHPAVLLLH---------GTYRSGADMVARDFAGEMLGPG 94
           G  L ++ L Y T G        AVL+ H         G Y    D V   +   M+GPG
Sbjct: 22  GSALADYSLTYETYGTLNADKSNAVLVCHALNASHHVAGVYADDPDNVG--WWDNMVGPG 79

Query: 95  QPLDASKYYVIMPDAIG--VGKS----AKPSDG--LRTKFPQYNYADMVLAQYRLVTEGL 146
           + LD  +++VI  + +G   G +    A P+ G      FP     D V AQ RL  + L
Sbjct: 80  KSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGADFPVVTVEDWVNAQARL-ADRL 138

Query: 147 GVKHLRLVMGNSMGGMQTWMWGETYPAMMDGLVPMASQPIEMASRNWMMRRMLVESIKQD 206
           G+     VMG S+GGMQ   W   YP  +   + +AS P +++++N     +  ++I  D
Sbjct: 139 GITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIASTP-KLSAQNIAFNDVARQAILTD 197

Query: 207 PAWNGGNY 214
           P ++GG++
Sbjct: 198 PQYHGGDF 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 847,025
Number of extensions: 36956
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)