BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0326.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311110|ref|YP_003775202.1| NTP pyrophosphohydrolase [Herba...   207   3e-55

>gi|300311110|ref|YP_003775202.1| NTP pyrophosphohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 191

 Score =  207 bits (527), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/184 (59%), Positives = 129/184 (70%), Gaps = 30/184 (16%)

Query: 6   DAHLNEIKVDGELVYEGHFLKVQRDTIRLPDGKQSVREHIRHPGAVVILPLFDDGSVLLE 65
           DAHL E + D   VY GHFLKVQ+DT+ LPDGK +VRE+I+HPGAV +LPLFDDGSVL+E
Sbjct: 2   DAHLKETQKDNRQVYTGHFLKVQQDTVILPDGKHAVREYIKHPGAVAVLPLFDDGSVLME 61

Query: 66  RQFRYPLDQVFIEFPA---PPG-------------------------GSIYNMTA--GER 95
           RQFRYPL +VFIEFPA    PG                          +I+N  A   E 
Sbjct: 62  RQFRYPLHRVFIEFPAGKIDPGEDTLDCAKRELQEETGYTAAQWQYVCTIHNAIAYSDEH 121

Query: 96  XDIYLARGLTAGERKLDDGEFLDIYKAPLSELLEQVRLGKVTDVKTVIGAFWLEKIINGQ 155
             +Y+ARGLT GERKLD+GEFLDIYKAPL EL+EQVR G++TDVKTVIG FWLEKI++G 
Sbjct: 122 LVLYVARGLTQGERKLDEGEFLDIYKAPLEELVEQVRNGEITDVKTVIGVFWLEKILSGA 181

Query: 156 WTLP 159
           WT P
Sbjct: 182 WTPP 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,022
Number of extensions: 23289
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)