BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0324.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311108|ref|YP_003775200.1| NADH-ubiquinone oxidoreductase ...   273   8e-75

>gi|300311108|ref|YP_003775200.1| NADH-ubiquinone oxidoreductase
           subunit N [Herbaspirillum seropedicae SmR1]
          Length = 502

 Score =  273 bits (697), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 1   MNNMNLIPVYPEIFLLIATSVILLIDMFLPDAKRVITYVLSLLALVVCAVLTFTNYASGE 60
           MNNMNLIPVYPEIFLLIATS ILLIDMFLP++KRVITY+LSL ALVVCAVLTF +  SG 
Sbjct: 1   MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNSGA 60

Query: 61  TVYTFSNMFVSDPLSSLLKLFSYLAIGLTLIYGRQYNSDRGIVGGGHLGGEFYALALFAL 120
           TVYTF+NMFVSDPL++LLKLF+YL +G+TLIY RQYN+ RGI  GG LGGE+YALALFAL
Sbjct: 61  TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGIT-GGMLGGEYYALALFAL 119

Query: 121 LGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDNVGSTEAAMKYF 167
           LGQMVMISGNSFLSIYLGLELMSLSLYALVALRRD+  STEA MKYF
Sbjct: 120 LGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYF 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 523,295
Number of extensions: 18599
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)