BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0315.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E ...   311   1e-86
gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydroge...    75   4e-15

>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  311 bits (798), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 146/159 (91%), Positives = 154/159 (96%)

Query: 5   MLLSQDALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 64
           MLLSQ+ALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV
Sbjct: 1   MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 60

Query: 65  QEVATFYNMFNTSQQGKHKITVCTNLPCLLSGGDRAAHHLKHTLGVGYKETTADGQFTIV 124
           QEVATFYNMFNTS  GKHKITVCTNLPCLLSGG+RAAHHLK  LG+ Y+ETTADGQFT++
Sbjct: 61  QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 120

Query: 125 EGECMGACGDAPVMLVNNHRMCSWMSNDKIDALLEELKK 163
           EGECMGACGDAPVMLVNNH+MCSWMSN+KIDALLEELKK
Sbjct: 121 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 159


>gi|300310806|ref|YP_003774898.1| NAD-dependent formate
           dehydrogenase subunit gamma [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score = 74.7 bits (182), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 29  SAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQEVATFYNMFNTSQQGKHKITVCT 88
            A++  L   Q + G++PA+    IA  + +    V  V +FY+ F     G+H + VC 
Sbjct: 24  GAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAGRHVVQVCR 83

Query: 89  NLPCLLSGGDRAAHHLKHTLGVGYKETTADGQFTIVEGECMGACGDAPVMLVNNHRMCSW 148
              C   GG+  A H ++ LG G+ +T+ADGQFT+    C+G C   P + +++  + + 
Sbjct: 84  AEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGPNLTLDD-ELHAR 142

Query: 149 MSNDKIDALLE 159
           +  DK   L++
Sbjct: 143 VDADKFKRLIQ 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 501,016
Number of extensions: 19352
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)