BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0308.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311094|ref|YP_003775186.1| triosephosphate isomerase [Herb...   350   6e-98

>gi|300311094|ref|YP_003775186.1| triosephosphate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score =  350 bits (898), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/250 (81%), Positives = 223/250 (89%), Gaps = 2/250 (0%)

Query: 1   MRRKLVAGNWKMNGGLAANAALVADVKAGLAAVGANADVAVCVPAPYLAQVQAAVAGSAL 60
           MRRKLVAGNWKMNG LAANAALVA +K GLAA     DVAVCVPAPYLAQVQA VAGS +
Sbjct: 1   MRRKLVAGNWKMNGSLAANAALVAGIKEGLAAQAC--DVAVCVPAPYLAQVQALVAGSPV 58

Query: 61  ALGSQDVSAHASGAYTGEVSAVMLAEFGCKYAIVGHSERRAYHGENDAAVAAKTAAALKA 120
            LG+QD+SAHASGAYTGEVSA ML EFG +Y I+GHSERRAYHGE+DAAVAAKT AALKA
Sbjct: 59  GLGAQDMSAHASGAYTGEVSASMLQEFGVQYVILGHSERRAYHGESDAAVAAKTVAALKA 118

Query: 121 GLTPIVCVGETLAEREAGRTNAVVGGQLDVVLAALDASDVQKIVVAYEPVWAIGTGKTAT 180
           GL P+VCVGETL +REAG+TNAVVGGQLDVVLAAL A +  +IVVAYEPVWAIGTGKTAT
Sbjct: 119 GLVPLVCVGETLEQREAGQTNAVVGGQLDVVLAALSAEEAARIVVAYEPVWAIGTGKTAT 178

Query: 181 PDMAQDVHAMLRARLAAKNADAAVRVQILYGGSMKPDNAKELLAMSDIDGGLIGGAALKA 240
           P+MAQ+VHAMLRARL AK+A+AA +V ILYGGSMKPDNA++LLAM DIDGGLIGGAALKA
Sbjct: 179 PEMAQEVHAMLRARLGAKSAEAAAKVCILYGGSMKPDNAQQLLAMGDIDGGLIGGAALKA 238

Query: 241 ADFLAIVQAA 250
           ADFLAI+ AA
Sbjct: 239 ADFLAIINAA 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 533,181
Number of extensions: 16294
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)