BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0303.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311089|ref|YP_003775181.1| LamB/YcsF family protein [Herba...   425   e-120
gi|300313397|ref|YP_003777489.1| LamB/YcsF family protein [Herba...   171   6e-44

>gi|300311089|ref|YP_003775181.1| LamB/YcsF family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  425 bits (1093), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/244 (83%), Positives = 224/244 (91%)

Query: 1   MHIDLNADLGEGCDNDEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIGAHPSF 60
           MHIDLNADLGEGCD DEQLLTLVSSANIACGWHAGDANTMR+SVRWAI+NHVAIGAHPSF
Sbjct: 1   MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDANTMRRSVRWAIQNHVAIGAHPSF 60

Query: 61  PDRENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAKDAVLA 120
           PDRENFGRSAM LPPEEI+SGMLYQLGAL+AIVRAEGG M HVKPHGALYNQAAKDAVLA
Sbjct: 61  PDRENFGRSAMQLPPEEIVSGMLYQLGALEAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120

Query: 121 HAICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRTLPGAM 180
           +AIC+AIRTFNPEL+L+GLAGSELI AA+ A L AVEEVFADRAY ADGSLV+R+ PGA+
Sbjct: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAL 180

Query: 181 IEDEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRLSNEHI 240
           I+++A AIAQT+  VK K+V AIDGS+V+VNAQTVCLHGDGAHAL+FARQIR RL  E I
Sbjct: 181 IDNDADAIAQTLMLVKQKKVKAIDGSIVEVNAQTVCLHGDGAHALDFARQIRARLHEERI 240

Query: 241 GVRA 244
            VRA
Sbjct: 241 AVRA 244


>gi|300313397|ref|YP_003777489.1| LamB/YcsF family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  171 bits (432), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 137/250 (54%), Gaps = 9/250 (3%)

Query: 3   IDLNADLGEGCDN-------DEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIG 55
           +DLN+D+GEG          D  +L L+SSANIA G+HAGD NTMR++V  A ++ VAIG
Sbjct: 4   VDLNSDMGEGFGPWTIGDGVDAAILPLISSANIATGFHAGDPNTMRRTVELARQHGVAIG 63

Query: 56  AHPSFPDRENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAK 115
           AHP F D   FGR  +N P  E+++ MLYQLGAL    R  G  + H+KPHGALY   A+
Sbjct: 64  AHPGFRDLVGFGRRHLNAPAIELVNDMLYQLGALREFARLNGLPLQHIKPHGALYMHLAR 123

Query: 116 DAVLAHAICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRT 175
           D   A      +R  +P L LF + GS +   A++     V E +ADR Y+  GS+V   
Sbjct: 124 DEEAARVFVQTLRQLDPNLLLFCMHGSAVWRVAQELQQAVVCEFYADRDYDNSGSIVFTR 183

Query: 176 LPGAMIEDEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRL 235
             GA+  D AQ  A+ +    +  V  ++G  + +   +VC+H D   AL   +  R  L
Sbjct: 184 RVGAL--DAAQVAAKVLRACCEGVVRTVEGRDIPIAFDSVCIHSDTPGALALVQATRNSL 241

Query: 236 SNEHIGVRAP 245
               I + AP
Sbjct: 242 EAADIAIAAP 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 784,119
Number of extensions: 31539
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)