BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0301.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757...   535   e-153

>gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  535 bits (1379), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 252/334 (75%), Positives = 285/334 (85%)

Query: 1   MQLTIELAAAYTEMPLTYLRQEYPNHIMHVLHSADDVLSPRAMHPVFYGCYDWHSAVHGY 60
           MQLT+E A  +  MPL YLRQEYPNHIMHVL+ A DVLSPRAMHPVFYGCYDWHSAVHG+
Sbjct: 1   MQLTLERAEEFARMPLAYLRQEYPNHIMHVLNDAGDVLSPRAMHPVFYGCYDWHSAVHGF 60

Query: 61  WLLLRCAKLYPALPTQDKITAIFDEHFTPALMAQETAYFQVGGRASFERPYGFGWILGLA 120
           WLLLRC + YP LP + ++ AIFDEHFTP LM +ET YF+VGGRASFERPYGFGWIL L 
Sbjct: 61  WLLLRCVQRYPELPARAEVEAIFDEHFTPELMERETDYFRVGGRASFERPYGFGWILALD 120

Query: 121 QELAASSHPRAAAWHAAMQPLTLEIRKRLLEYLGKLTYPIRVGTHYNTAFALALALDYAR 180
           QELA S+ PRAA+W  AMQPLTLEIR+RLLEYL KL+YPIRVGTHYNTAFALAL+LD AR
Sbjct: 121 QELAQSTLPRAASWRTAMQPLTLEIRRRLLEYLSKLSYPIRVGTHYNTAFALALSLDQAR 180

Query: 181 AAKDGALESAIIQASQGYYGKDADYPAHYEPGGDEYISAALTEALLMSKVLDARAFPAWF 240
             KD  LE  I+ ++Q YYGKD DYPAHYEPGGDEYIS ALTEALLMSKVL A+AF AWF
Sbjct: 181 HVKDIELEQVILASAQRYYGKDTDYPAHYEPGGDEYISGALTEALLMSKVLSAQAFAAWF 240

Query: 241 DTFLPQIDKIERLMQPAQVSDRTDPKIAHLDGLNLSRAWCMKHIARHLPSAHAAQPALSG 300
           D +LP++ +IE++MQPA VSD TDPKIAHLDGLNLSRAWCMK + RHLP+ HAA+ A+  
Sbjct: 241 DQYLPRVAEIEQIMQPALVSDPTDPKIAHLDGLNLSRAWCMKTVLRHLPAGHAARSAIEA 300

Query: 301 AIERHLKASVDHVVGSHYSGGHWLASFALLALED 334
           AI+RH+ AS+D VVGSHYSGGHWLASFA+LALED
Sbjct: 301 AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,136,207
Number of extensions: 47959
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)