BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0299.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311085|ref|YP_003775177.1| NADH dehydrogenase [Herbaspiril...   268   3e-73

>gi|300311085|ref|YP_003775177.1| NADH dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score =  268 bits (684), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 145/161 (90%)

Query: 1   VIIVGCGFGGLAAARALADAKVDITIIDRSNHHLFQPLLYQVATAGLSAPAISAPIRSIL 60
           V+I+GCGFGGLAAAR LA+A+V IT+IDRSNHHLFQPLLYQVATAGLSAPAISAPIR+IL
Sbjct: 4   VVIIGCGFGGLAAARELANAEVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIRAIL 63

Query: 61  AEQRNITSLMAAVGDIDVTRKTVALEDGSEIAYDYLIVAAGSTHSYFGRDEWATLAPGLK 120
           A QRN+T+LMAAV  ID   KTV LEDGS +AYD+LIVAAGSTHSYFGRDEW++LAPGLK
Sbjct: 64  AHQRNLTTLMAAVTGIDTAAKTVQLEDGSTMAYDHLIVAAGSTHSYFGRDEWSSLAPGLK 123

Query: 121 TLEDAFDIRRRILMAFEYAEREDDPVRRAEWLTFTVIGAGA 161
           TLEDAF+IR+RILMAFE AERE D  RR EWLTFTVIG GA
Sbjct: 124 TLEDAFEIRKRILMAFERAERESDARRRQEWLTFTVIGGGA 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 550,207
Number of extensions: 20779
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)