BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0298.p
         (710 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidylt...  1331   0.0  

>gi|300311084|ref|YP_003775176.1| polyribonucleotide
           nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 712

 Score = 1331 bits (3445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/712 (92%), Positives = 683/712 (95%), Gaps = 2/712 (0%)

Query: 1   VFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSIEDTVVLATVVARKDAKPGQDFFPLT 60
           +FNKVTKTFQYGQHQVTLETGEIARQASGAVVVS+EDTV+LATVVARK+AKPGQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60

Query: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
           VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120

Query: 121 NPEIDPDIAAMIGASAALSIAGIPFNGPVGAARVGYIDGQYVLNPTATQLKTSQLDLVVA 180
           NPEIDPDI AMIGASAALS+AGIPFNGPVGAARVGYIDGQYVLNPT +QLK+SQLDLVVA
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180

Query: 181 GTETAVLMVESEAKQLSEEIMLGAVVFGHDQSKAVINAIHELVRDGGKPEVQWTAPAKNE 240
           GTETAVLMVESEA QLSEE+MLGAVVFGHDQSKAVI AIH LVRDGGKPEVQWTAPAKNE
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240

Query: 241 PLIARVTALADDKLRAAYQTKDKQARTEKLKTVTSEVNAALAADAAAAGTSAADSAEVGG 300
            LIARV+ LA+  LR AYQTKDKQARTEKLK VT++VN AL A+AAA    AAD+AEVG 
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300

Query: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
           ILFDLEAKIVRSQIL+GEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 361 LGTARDEQKIDALMGEYTDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
           LGTARDEQKID L+GEY+DRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
Sbjct: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420

Query: 421 PPAEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKEGSKF 480
           P A+EFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPM+AHVAGIAMGLIKEG+KF
Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF 480

Query: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRVHILG 540
           AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGR HILG
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540

Query: 541 KMQEAVPAGAGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
           KMQEAVPAG  ELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 601 TIASVDAGAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
           TIASVDA AGQEAKRRIEELTASVEVGK+YEGTVLKLLDFGAIVQVLPGKDGLLHISQIA
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660

Query: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQ--EGTEAPASQDAQ 710
           NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQ  EG EA A Q+AQ
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEGGEAAAPQEAQ 712


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,055,955
Number of extensions: 85995
Number of successful extensions: 339
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 618
Effective length of database: 1,184,250
Effective search space: 731866500
Effective search space used: 731866500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)