BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0293.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase [H...   270   6e-74
gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase [H...   166   7e-43
gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase [H...    57   5e-10

>gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  270 bits (689), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/146 (86%), Positives = 134/146 (91%)

Query: 4   LMPAGAVYHCMADDDVNRILSHPATVIGSDGLPNDPLPHPRLWGAFPRVLGYYSREQKLF 63
           LMPAGAVYHCM+DDDVNRILSHPATV+GSDGLPNDPLPHPRLWGAFPRVLGYYSREQKLF
Sbjct: 344 LMPAGAVYHCMSDDDVNRILSHPATVVGSDGLPNDPLPHPRLWGAFPRVLGYYSREQKLF 403

Query: 64  SLAAAVRKMTGLSAQRFGLHERGLVKAGYWADLVLFDAATIRDAATFTDPMQPAHGIDAV 123
           SLA AV KMTGLSAQRFGL  RG V+ GY ADLVLFDA T+RDAA+FTDPMQPAHGI+AV
Sbjct: 404 SLATAVHKMTGLSAQRFGLDLRGFVRVGYHADLVLFDAETVRDAASFTDPMQPAHGIEAV 463

Query: 124 WVNGVLSYRGDDKKATGERAGRFLAR 149
           WVNG L+YRG DKKAT  RAGRFLAR
Sbjct: 464 WVNGELAYRGQDKKATAARAGRFLAR 489


>gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  166 bits (421), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 105/147 (71%), Gaps = 2/147 (1%)

Query: 4   LMPAGAVYHCMADDDVNRILSHPATVIGSDGLPNDPLPHPRLWGAFPRVLGYYSREQKLF 63
           L PA AVY  M + DV  IL+   T+IGSDG+P    PHPRLWG FPR+LG+YSR+  LF
Sbjct: 337 LQPASAVYFGMDESDVRNILAFDETMIGSDGIPTGEKPHPRLWGTFPRILGHYSRDLGLF 396

Query: 64  SLAAAVRKMTGLSAQRFGLHERGLVKAGYWADLVLFDAATIRDAATFTDPMQPAHGIDAV 123
            L  AV KMTGL+A+ F LHERG ++ G++AD+V+FDAATIRD A++  P +PA GIDAV
Sbjct: 397 DLEVAVWKMTGLTARNFKLHERGTLEVGHYADIVVFDAATIRDTASYETPAEPAQGIDAV 456

Query: 124 WVNGVLSYRGDDKKATGERAGRFLARQ 150
            VNGV+++R    +  G RAG  +AR 
Sbjct: 457 IVNGVVTWRL--GQHMGARAGHVIARH 481


>gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 550

 Score = 57.4 bits (137), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 14  MADDDVNRILSHPATVIGSDGLPNDPLPHPRLWGAFPRVLGYYSREQKLFSLAAAVRKMT 73
            ++ DV   +  P  +  SD        HPR   +F      Y R Q   +LA  +R  T
Sbjct: 411 QSNKDVVAFMKRPWVMTSSDSFHG----HPRTVASFAEKYHEYVRNQHTITLAQFIRSST 466

Query: 74  GLSAQRFGLHERGLVKAGYWADLVLFDAATIRDAATFTDPMQPAHGIDAVWVNGVLSYRG 133
              A   G+  RG ++ G++AD+V+FD       AT+ +  + + G+ A  VNG L    
Sbjct: 467 SYPADALGIARRGRLQPGHFADVVVFDPIAYAPRATYVNNEERSVGVVATVVNGELVV-- 524

Query: 134 DDKKATGERAGRFLAR 149
           D+ + T    GR L R
Sbjct: 525 DEGRLTNAMPGRPLLR 540


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 569,893
Number of extensions: 24734
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)