BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0289.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311077|ref|YP_003775169.1| D-serine deaminase [Herbaspiril...   701   0.0  

>gi|300311077|ref|YP_003775169.1| D-serine deaminase [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/431 (77%), Positives = 369/431 (85%), Gaps = 1/431 (0%)

Query: 2   MNDTNYQKEWQSGLIDPLNKGIGTLTAPLAPDAANALPWNLLKEDLSLPTAVLYEERLTH 61
           MNDTNYQ  +++G+IDPLNKG+G L   L P  A  + WNLL ED+SLP AVLYEE++ H
Sbjct: 1   MNDTNYQGAYEAGIIDPLNKGLGPLPQALPPGQAGTVRWNLLNEDISLPAAVLYEEKIAH 60

Query: 62  NLDWMQRFVTEYGVKLAPHGKTTMAPKLFARQLATGAWGITLATAHQTNVAYHHGVRRVL 121
           NL WMQ FV +Y +KLAPHGKTTMAPKLFARQL TGAWGITLATAHQT   YHHGVRRV+
Sbjct: 61  NLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAGYHHGVRRVI 120

Query: 122 MANQLVGKQNMQIVSRLLEDPSFEFFCLVDSADLVDQLGRFFSEKKQTLNVLLELGPVGG 181
           MANQLVGK+NM I+S LL DPSFEFFCLVDSA LVDQLGRFF+E+KQTLNVLLELGP GG
Sbjct: 121 MANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQLGRFFAERKQTLNVLLELGPTGG 180

Query: 182 RTGVRDNEQQAAVLAAVKRWEGSIALSGIEVYEGVLKEEADIRLFLQRAVQCAKDLAQQG 241
           RTGVRD  QQ AVL A+ RW+ SIAL+G+EVYEGVLKEE DIR FLQRAV C +DLA QG
Sbjct: 181 RTGVRDEAQQQAVLEAISRWD-SIALAGVEVYEGVLKEEVDIRRFLQRAVACLQDLAAQG 239

Query: 242 YLSHRTAQKPAVLTGAGSAWYDVVAEEFAGADIGVPLDVVLRPGCYLTHDVGVYRAAQEQ 301
            L+ R A+ PAVLTGAGSAWYDVVAEEF  ADIG  LDVVLRPGCYLTHDVG+YRAAQ Q
Sbjct: 240 QLARRLARGPAVLTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQAQ 299

Query: 302 IQTRNPVARKMRSELLPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPLPVKRFRPGQ 361
           IQ RNPVA  MRS+L PALQLWAYVQSIPE+DKAIIALGKRDAAFDAGLP+PV RFRPG+
Sbjct: 300 IQVRNPVAHSMRSQLQPALQLWAYVQSIPESDKAIIALGKRDAAFDAGLPMPVSRFRPGR 359

Query: 362 DLAPADSPAHWEVTGMMDQHAYLRIAPGDDIRVGDMIAFDISHPCLTFDKWRHLPVLDAK 421
           D  P  +PAHWEVTGMMDQHAYL+IA GDDI VGDMIAFDISHPCLTFDKWRHL V+D +
Sbjct: 360 DTGPQATPAHWEVTGMMDQHAYLKIAAGDDIEVGDMIAFDISHPCLTFDKWRHLVVVDGR 419

Query: 422 FNVLDIVQTFF 432
           F+V DIVQTFF
Sbjct: 420 FDVTDIVQTFF 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,382,262
Number of extensions: 59272
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)